Evidence map›Paper›PMID 23569244›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Thymoproteasome subunit-β5T generates peptide-MHC complexes specialized for positive selection.

Yan Xing, Stephen C Jameson, Kristin A Hogquist

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 95 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Plasticity in the structure and assembly of proteasomes.The Journal of biological chemistry · 2026
    Review
  6. Article
  7. Review
  8. Review
  9. Proteasome: Role in T Cell Function Regulation.International journal of biological sciences · 2025
    Review
  10. Review
  11. A journey to your self: The vague definition of immune self and its practical implications.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. The thymoproteasome in shaping the CD8Current opinion in immunology · 2023
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yan XingDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN 55414, USA.
Stephen C Jameson
Kristin A Hogquist
University of Minnesota · US

Funding

Cortical epithelial cells in the selection and maturation of CD8 T cellsR01AI088209 · NIAID · UNIVERSITY OF MINNESOTA · PI HOGQUIST, KRISTIN A. · 2010 to 2014
$1.8M
NIAID NIH HHS R01 AI088209
6 · The paper itself

Abstract

Cortical thymic epithelial cells (cTECs) express a unique thymoproteasome subunit-β5T that plays an essential role in the development of CD8 T cells. In contrast, the immunoproteasome subunit-β5i is expressed in other thymic antigen-presenting cells (APCs). The thymoproteasome may generate peptides that are specialized for positive selection, or it may simply serve to generate peptides that are distinct from other APCs that cause negative selection, thereby promoting an overall larger number of surviving clones to mature and function in the immune system. To distinguish these models, we genetically engineered mice to express distinct peptide repertoires in cTECs vs. other APCs without expressing β5T, by generating β5t(5i) knockin mice, in which β5i replaced β5T in cTECs. When such animals were crossed to β5i(-/-) mice, β5i was exclusively expressed in cTECs, whereas β5 was expressed in other cells. However, this mouse did not support normal positive selection, suggesting that β5T generates peptides that are intrinsically better for positive selection (i.e., β5i could not replace β5T) and not merely because these peptides are distinct from peptides presented by other APCs. Finally, using an Nur77(GFP) reporter, we show that the T cells generated in the absence of β5T have higher reactivity to self, generating predominantly CD44(hi) memory phenotype peripheral CD8(+) T cells. Altogether, our results suggest that the thymoproteasome supports positive selection by generating peptides that are optimized for the selection of weakly self-reactive, naïve T-cell clones.

Indexed as

Models, ImmunologicalAnimalsBlotting, WesternCD8-Positive T-LymphocytesCrosses, GeneticDNA PrimersEpithelial CellsFlow CytometryGene Knock-In TechniquesMajor Histocompatibility ComplexMiceMice, TransgenicNuclear Receptor Subfamily 4, Group A, Member 1PeptidesProteasome Endopeptidase ComplexThymus GlandDNA PrimersNuclear Receptor Subfamily 4, Group A, Member 1PeptidesProteasome Endopeptidase Complexproteasome subunit beta5t, mouse

Identifiers

PMID23569244
PMCPMC3637736
OpenAlexW2130960197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.