Evidence map›Paper›PMID 23569226›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Bacillus subtilis biofilm induction by plant polysaccharides.

Pascale B Beauregard, Yunrong Chai, Hera Vlamakis, Richard Losick, Roberto Kolter

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 247 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
247citing papers in PubMed, 1 pooled it
46.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

247 citing papers in PubMed, 1 synthesis or guideline pooled it, 578 citations in OpenAlex.

  1. Root colonization by beneficial rhizobacteria.FEMS microbiology reviews · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Growth-Promoting Potential ofPlants (Basel, Switzerland) · 2026
    Article
  8. TwoInternational journal of molecular sciences · 2026
    Article
  9. Article
  10. Whole-genome sequencing ofMicrobiology resource announcements · 2026
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Biofilms: from the cradle of life to life support.NPJ biofilms and microbiomes · 2026
    Review
  16. Review
  17. Article
  18. Adaptation to Climatic Change and Epigenetic Modifications of Soil Microbiome.Advances in experimental medicine and biology · 2026
    Review
  19. Article
  20. Frontiers in plant science · 2026
    Article

187 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pascale B BeauregardDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Yunrong Chai
Hera Vlamakis
Richard Losick
Roberto Kolter
Harvard University · US

Funding

Role of RNA Polymerase in Bacterial DifferentionR01GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1985 to 2018
$11.5M
MOLECULAR GENETICS OF BIOFILM FORMATIONR01GM058213 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RUDNER, DAVID Z · 1998 to 2017
$7.5M
DEVELOPMENT OF A NOVEL DRUG DELIVERY SYSTEMF31GM018546 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI QUALLS, MARQUITA M · 1996 to 1999
–
NIGMS NIH HHS F31 GM018546NIGMS NIH HHS GM18546NIGMS NIH HHS GM58213NIGMS NIH HHS R01 GM018568NIGMS NIH HHS R01 GM058213
6 · The paper itself

Abstract

Bacillus subtilis is a plant-beneficial Gram-positive bacterium widely used as a biofertilizer. However, relatively little is known regarding the molecular processes underlying this bacterium's ability to colonize roots. In contrast, much is known about how this bacterium forms matrix-enclosed multicellular communities (biofilms) in vitro. Here, we show that, when B. subtilis colonizes Arabidopsis thaliana roots it forms biofilms that depend on the same matrix genes required in vitro. B. subtilis biofilm formation was triggered by certain plant polysaccharides. These polysaccharides served as a signal for biofilm formation transduced via the kinases controlling the phosphorylation state of the master regulator Spo0A. In addition, plant polysaccharides are used as a source of sugars for the synthesis of the matrix exopolysaccharide. The bacterium's response to plant polysaccharides was observed across several different strains of the species, some of which are known to have beneficial effects on plants. These observations provide evidence that biofilm genes are crucial for Arabidopsis root colonization by B. subtilis and provide insights into how matrix synthesis may be triggered by this plant.

Indexed as

Analysis of VarianceArabidopsisBacillus subtilisBacterial ProteinsBiofilmsCarbonDNA PrimersExtracellular MatrixFlow CytometryGalactansImage Processing, Computer-AssistedMicroscopy, FluorescencePlant RootsPlasmidsPolysaccharidesSpecies SpecificityarabinogalactanBacterial ProteinsCarbonDNA PrimersGalactansPolysaccharidesSpo0A protein, Bacillus subtilisTranscription Factors

Identifiers

PMID23569226
PMCPMC3637697
OpenAlexW2012117313

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.