Evidence map›Paper›PMID 23569204›Full record

ArticleThe Journal of biological chemistry2013

Structural and functional characterization of a phosphatase domain within yeast general transcription factor IIIC.

Nicholas M I Taylor, Sebastian Glatt, Marco L Hennrich, Gudrun von Scheven, Helga Grötsch, Carlos Fernández-Tornero, Vladimir Rybin, Anne-Claude Gavin, Peter Kolb, Christoph W Müller

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  9. Solving the RNA polymerase I structural puzzle.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nicholas M I TaylorStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Sebastian Glatt
Marco L Hennrich
Gudrun von Scheven
Helga Grötsch
Carlos Fernández-Tornero
Vladimir Rybin
Anne-Claude Gavin
Peter Kolb
Christoph W Müller

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saccharomyces cerevisiae τ55, a subunit of the RNA polymerase III-specific general transcription factor TFIIIC, comprises an N-terminal histidine phosphatase domain (τ55-HPD) whose catalytic activity and cellular function is poorly understood. We solved the crystal structures of τ55-HPD and its closely related paralogue Huf and used in silico docking methods to identify phosphoserine- and phosphotyrosine-containing peptides as possible substrates that were subsequently validated using in vitro phosphatase assays. A comparative phosphoproteomic study identified additional phosphopeptides as possible targets that show the involvement of these two phosphatases in the regulation of a variety of cellular functions. Our results identify τ55-HPD and Huf as bona fide protein phosphatases, characterize their substrate specificities, and provide a small set of regulated phosphosite targets in vivo.

Indexed as

Crystallography, X-RayMolecular Docking SimulationPhosphoric Monoester HydrolasesProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors, TFIIITranscription Factor TFIIICPhosphoric Monoester HydrolasesSaccharomyces cerevisiae ProteinsTranscription Factors, TFIIITranscription Factor TFIIICYNL108C protein, S cerevisiaeEnzyme StructureHistidine Phosphatase FamilyMass Spectrometry (MS)MetabolismMolecular DockingPhosphoproteomicsProtein PhosphataseRNA Polymerase IIITranscription RegulationX-ray Crystallography

Identifiers

PMID23569204
PMCPMC3663531

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.