Evidence map›Paper›PMID 23569203›Full record

ArticleThe Journal of biological chemistry2013

The variable domain of a plant calcium-dependent protein kinase (CDPK) confers subcellular localization and substrate recognition for NADPH oxidase.

Shuta Asai, Tatsushi Ichikawa, Hironari Nomura, Michie Kobayashi, Yusuke Kamiyoshihara, Hitoshi Mori, Yasuhiro Kadota, Cyril Zipfel, Jonathan D G Jones, Hirofumi Yoshioka

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 126 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Shuta AsaiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan; The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Tatsushi IchikawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Hironari NomuraGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Michie KobayashiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan; Iwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate 024-0003, Japan.
Yusuke KamiyoshiharaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan; Department of Horticultural Sciences, University of Florida, Gainesville, Florida 32611-0690.
Hitoshi MoriGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Yasuhiro KadotaThe Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Cyril ZipfelThe Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Jonathan D G JonesThe Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Hirofumi YoshiokaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan. Electronic address: hyoshiok@agr.nagoya-u.ac.jp.
Nagoya University · JPNorwich Research Park · GBSainsbury Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calcium-dependent protein kinases (CDPKs) are Ca(2+) sensors that regulate diverse biological processes in plants and apicomplexans. However, how CDPKs discriminate specific substrates in vivo is still largely unknown. Previously, we found that a potato StCDPK5 is dominantly localized to the plasma membrane and activates the plasma membrane NADPH oxidase (RBOH; for respiratory burst oxidase homolog) StRBOHB by direct phosphorylation of the N-terminal region. Here, we report the contribution of the StCDPK5 N-terminal variable (V) domain to activation of StRBOHB in vivo using heterologous expression system in Nicotiana benthamiana. Mutations of N-terminal myristoylation and palmitoylation sites in the V domain eliminated the predominantly plasma membrane localization and the capacity of StCDPK5 to activate StRBOHB in vivo. A tomato SlCDPK2, which also contains myristoylation and palmitoylation sites in its N terminus, phosphorylated StRBOHB in vitro but not in vivo. Functional domains responsible for activation and phosphorylation of StRBOHB were identified by swapping regions for each domain between StCDPK5 and SlCDPK2. The substitution of the V domain of StCDPK5 with that of SlCDPK2 abolished the activation and phosphorylation abilities of StRBOHB in vivo and relocalized the chimeric CDPK to the trans-Golgi network, as observed for SlCDPK2. Conversely, SlCDPK2 substituted with the V domain of StCDPK5 localized to the plasma membrane and activated StRBOHB. These results suggest that the V domains confer substrate specificity in vivo by dictating proper subcellular localization of CDPKs.

Indexed as

Gene Expression Regulation, PlantMutationCalciumCalcium-Calmodulin-Dependent Protein KinasesCell MembraneMicroscopy, ConfocalNADPH OxidasesNicotianaPhosphorylationPlant ImmunityPlant ProteinsProtein KinasesReactive Oxygen SpeciesRecombinant ProteinsRespiratory BurstSignal TransductionCalciumCalcium-Calmodulin-Dependent Protein KinasesNADPH OxidasesPlant ProteinsProtein KinasesReactive Oxygen SpeciesRecombinant ProteinsCalcium-dependent Protein KinaseNADPH OxidasePhosphorylationPlant DefensePlant ImmunityReactive Oxygen Species (ROS)Signal Transduction

Identifiers

PMID23569203
PMCPMC3656289
OpenAlexW2159762127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.