ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013
Fine mapping and identification of candidate genes controlling the resistance to southern root-knot nematode in PI 96354.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 53 citations in OpenAlex.
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- Exploring Machine Learning Algorithms to Unveil Genomic Regions Associated With Resistance to Southern Root-Knot Nematode in Soybeans.Frontiers in plant science · 2022Article
- Identification of genomic loci conferring broad-spectrum resistance to multiple nematode species in exotic soybean accession PI 567305.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
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- Identification and characterization of a fast-neutron-induced mutant with elevated seed protein content in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Candidate genes underlying the quantitative trait loci for root-knot nematode resistance in a Cucumis hystrix introgression line of cucumber based on population sequencing.Journal of plant research · 2019Article
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- Advancements in breeding, genetics, and genomics for resistance to three nematode species in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Review
- A novel Phakopsora pachyrhizi resistance allele (Rpp) contributed by PI 567068A.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance.BMC genomics · 2015Article
- Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C.Molecular breeding : new strategies in plant improvementArticle
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Meloidogyne incognita (Kofoid and White) Chitwood (Mi) is the most economically damaging species of the root-knot nematode to soybean and other crops in the southern USA. PI 96354 was identified to carry a high level of resistance to galling and Mi egg production. Two Quantitative Trait Locus (QTLs) were found to condition the resistance in PI 96354 including a major QTL and a minor QTL on chromosome 10 and chromosome 18, respectively. To fine map the major QTL on chromosome 10, F5:6 recombinant inbred lines from the cross between PI 96354 and susceptible genotype Bossier were genotyped with Simple Sequence Repeats (SSR) markers to identify recombinational events. Analysis of lines carrying key recombination events placed the Mi-resistant allele on chromosome 10 to a 235-kb region of the 'Williams 82' genome sequence with 30 annotated genes. Candidate gene analysis identified four genes with cell wall modification function that have several mutations in promoter, exon, 5', and 3'UTR regions. qPCR analysis showed significant difference in expression levels of these four genes in Bossier compared to PI 96354 in the presence of Mi. Thirty Mi-resistant soybean lines were found to have same SNPs in these 4 candidate genes as PI 96354 while 12 Mi-susceptible lines possess the 'Bossier' genotype. The mutant SNPs were used to develop KASP assays to detect the resistant allele on chromosome 10. The four candidate genes identified in this study can be used in further studies to investigate the role of cell wall modification genes in conferring Mi resistance in PI 96354.
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