Evidence map›Paper›PMID 23568026›Full record

ArticleJournal of visualized experiments : JoVE2013

Biochemical and high throughput microscopic assessment of fat mass in Caenorhabditis elegans.

Elizabeth C Pino, Christopher M Webster, Christopher E Carr, Alexander A Soukas

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  6. Review
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  10. Article
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  12. Application ofInternational journal of molecular sciences · 2023
    Review
  13. Article
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  15. Article
  16. Rapid Lipid Quantification inBio-protocol · 2022
    Article
  17. Article
  18. Nutrients · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Elizabeth C PinoCenter for Human Genetic Research and Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Massachusetts, USA.
Christopher M Webster
Christopher E Carr
Alexander A Soukas
Massachusetts General Hospital · USCenter for Human Genetics · USMassachusetts Institute of Technology · US

Funding

TRAINING PROGRAM IN ENDOCRINOLOGY AND DIABETEST32DK007028 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Karen K Miller · 1986 to 2026
$18.5M
Obesity and diabetes genetics in Caenorhabditis elegans.K08DK087941 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI SOUKAS, ALEXANDER A · 2010 to 2014
$801k
NIDDK NIH HHS 5T32DK007028NIDDK NIH HHS K08 DK087941NIDDK NIH HHS K08DK087941NIDDK NIH HHS T32 DK007028
6 · The paper itself

Abstract

The nematode C. elegans has emerged as an important model for the study of conserved genetic pathways regulating fat metabolism as it relates to human obesity and its associated pathologies. Several previous methodologies developed for the visualization of C. elegans triglyceride-rich fat stores have proven to be erroneous, highlighting cellular compartments other than lipid droplets. Other methods require specialized equipment, are time-consuming, or yield inconsistent results. We introduce a rapid, reproducible, fixative-based Nile red staining method for the accurate and rapid detection of neutral lipid droplets in C. elegans. A short fixation step in 40% isopropanol makes animals completely permeable to Nile red, which is then used to stain animals. Spectral properties of this lipophilic dye allow it to strongly and selectively fluoresce in the yellow-green spectrum only when in a lipid-rich environment, but not in more polar environments. Thus, lipid droplets can be visualized on a fluorescent microscope equipped with simple GFP imaging capability after only a brief Nile red staining step in isopropanol. The speed, affordability, and reproducibility of this protocol make it ideally suited for high throughput screens. We also demonstrate a paired method for the biochemical determination of triglycerides and phospholipids using gas chromatography mass-spectrometry. This more rigorous protocol should be used as confirmation of results obtained from the Nile red microscopic lipid determination. We anticipate that these techniques will become new standards in the field of C. elegans metabolic research.

Indexed as

2-PropanolAnimalsCaenorhabditis elegansFatsGas Chromatography-Mass SpectrometryMicroscopy, FluorescenceOxazinesPhospholipidsStaining and LabelingTriglycerides2-PropanolFatsnile redOxazinesPhospholipidsTriglycerides

Identifiers

PMID23568026
PMCPMC3944676
OpenAlexW2148521682

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.