Evidence map›Paper›PMID 23566092›Full record

ArticleEpigenomics2013

Exposure to airborne particulate matter is associated with methylation pattern in the asthma pathway.

Tamar Sofer, Andrea Baccarelli, Laura Cantone, Brent Coull, Arnab Maity, Xihong Lin, Joel Schwartz

Abstract read
In one paragraph

Article in Epigenomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 2 pooled it
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  15. Article
  16. Role of epigenetics in the development of childhood asthma.Current opinion in allergy and clinical immunology · 2018
    Review
  17. The environment, epigenome, and asthma.The Journal of allergy and clinical immunology · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Tamar SoferDepartment of Biostatistics, Harvard School of Public Health, MA, USA. tsofer@hsph.harvard.edu
Andrea Baccarelli
Laura Cantone
Brent Coull
Arnab Maity
Xihong Lin
Joel Schwartz
Harvard University · USDana-Farber/Harvard Cancer Center · USFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITNorth Carolina State University · US

Funding

Translational Research Support CoreP30ES000002 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI SUSAN A KORRICK · 1985 to 2026
$44.6M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Statistical Methods for the Spatio-Temporal Assessment of Social Disparities in CancerP01CA134294 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HANEUSE, SEBASTIEN, HERNAN, MIGUEL · 2008 to 2017
$6.8M
Epigenetic Effects of Particles and Metals on Cardiac Health of an Aging CohortR01ES015172 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI SCHWARTZ, JOEL D · 2006 to 2015
$4.8M
Statistical Methods for Correlated and High-Dimensional Biomedical DataR37CA076404 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI LIN, XIHONG · 2007 to 2014
$2.5M
Statistical Methods for Analysis of High-Dimensional Gene and Environment DataR00ES017744 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI MAITY, ARNAB · 2011 to 2013
$663k
NCI NIH HHS P01 CA134294NCI NIH HHS P01-CA134294NCI NIH HHS R35 CA197449NCI NIH HHS R37 CA076404NCI NIH HHS R37-CA076404NIEHS NIH HHS ES00002NIEHS NIH HHS P30 ES000002NIEHS NIH HHS R00 ES017744NIEHS NIH HHS R00ES017744NIEHS NIH HHS R01 ES015172NIEHS NIH HHS R01ES015172ORD VA RD 83479801
6 · The paper itself

Abstract

backgroundAsthma exacerbation and other respiratory symptoms are associated with exposure to air pollution. Since environment affects gene methylation, it is hypothesized that asthmatic responses to pollution are mediated through methylation. MATERIALS &

methodsWe study the possibility that airborne particulate matter affects gene methylation in the asthma pathway. We measured methylation array data in clinic visits of 141 subjects from the Normative Aging Study. Black carbon and sulfate measures from a central monitoring site were recorded and 30-day averages were calculated for each clinic visit. Gene-specific methylation scores were calculated for the genes in the asthma pathway, and the association between the methylation in the asthma pathway and the pollution measures was analyzed using sparse Canonical Correlation Analysis.

resultsThe analysis found that exposures to black carbon and sulfate were significantly associated with the methylation pattern in the asthma pathway (p-values 0.05 and 0.02, accordingly). Specific genes that contributed to this association were identified.

conclusionThese results suggest that the effect of air pollution on asthmatic and respiratory responses may be mediated through gene methylation.

Indexed as

Promoter Regions, GeneticAgedAged, 80 and overAir PollutionAsthmaCarbonDNA MethylationEpigenesis, GeneticHumansMaleMetabolic Networks and PathwaysMiddle AgedParticulate MatterSulfatesCarbonParticulate MatterSulfates

Identifiers

PMID23566092
PMCPMC3767408
OpenAlexW2169375062

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.