Evidence map›Paper›PMID 23564452›Full record

ArticleThe Journal of biological chemistry2013

Point mutation in luminal loop 7 of Scap protein blocks interaction with loop 1 and abolishes movement to Golgi.

Yinxin Zhang, Massoud Motamed, Joachim Seemann, Michael S Brown, Joseph L Goldstein

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. The cellular function of SCAP in metabolic signaling.Experimental & molecular medicine · 2020
    Review
  7. A noncanonical PPARγ/RXRα-binding sequence regulates leptin expression in response to changes in adipose tissue mass.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Review
  9. Article
  10. Article
  11. Digenic mutations onOncotarget · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yinxin ZhangDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9046.
Massoud MotamedDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9046.
Joachim SeemannDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9046.
Michael S BrownDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9046. Electronic address: mike.brown@utsouthwestern.edu.
Joseph L GoldsteinDepartment of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9046. Electronic address: joe.goldstein@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USLaboratory of Molecular Genetics · PL

Funding

TRANSCRIPTIONAL REGULATION OF LDL RECEPTOR PROMOTERP01HL020948 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GOLDSTEIN, JOSEPH L · 1985 to 2021
$103.1M
CELL CYCLE REGULATION OF GOLGI MEMBRANE DYNAMICSR01GM096070 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SEEMANN, JOACHIM · 2011 to 2019
$3.0M
NHLBI NIH HHS HL20948NHLBI NIH HHS P01 HL020948NIGMS NIH HHS GM096070NIGMS NIH HHS R01 GM096070
6 · The paper itself

Abstract

Scap is a polytopic protein of the endoplasmic reticulum (ER) that controls cholesterol homeostasis by transporting sterol regulatory element-binding proteins (SREBPs) from the ER to the Golgi complex. Scap has eight transmembrane helices (TM) joined by four small hydrophilic loops and three large loops. Two of the large loops (Loops 1 and 7) are in the ER lumen, and the other large loop (Loop 6) faces the cytosol where it binds COPII proteins that initiate transport to Golgi. Cholesterol binding to Loop 1 alters the configuration of Loop 6, precluding COPII binding and preventing the exit of Scap from the ER. Here, we create a point mutation (Y640S) in luminal Loop 7 that prevents Scap movement to Golgi. Trypsin cleavage assays show that Loop 6 of Scap(Y640S) is always in the configuration that precludes COPII binding, even in the absence of cholesterol. When expressed separately by co-transfection, the NH2-terminal portion of Scap (containing TM helices 1-6, including Loop 1) binds to the COOH-terminal portion (containing TM helices 7-8 and Loop 7) as determined by co-immunoprecipitation. This binding does not occur when Loop 7 contains the Y640S mutation. Co-immunoprecipitation is also abolished by a point mutation in Loop 1 (Y234A) that also prevents Scap movement. These data suggest that Scap Loop 1 must interact with Loop 7 to maintain Loop 6 in the configuration that permits COPII binding. These results help explain the operation of Scap as a sterol sensor.

Indexed as

Amino Acid SequenceAnimalsCHO CellsCholesterolCricetinaeCulture MediaEndoplasmic ReticulumGolgi ApparatusHumansIntracellular Signaling Peptides and ProteinsMembrane LipidsMembrane ProteinsMolecular Sequence DataPlasmidsPoint MutationProtein Structure, SecondaryCholesterolCulture MediaIntracellular Signaling Peptides and ProteinsMembrane LipidsMembrane ProteinsSREBP cleavage-activating proteinSterol Regulatory Element Binding ProteinsSterolsCholesterol-binding ProteinCholesterol RegulationMembrane FunctionMembrane LipidsMembrane ProteinsScapSterol Regulatory Element-binding Protein (SREBP)

Identifiers

PMID23564452
PMCPMC3656263
OpenAlexW2106550424

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.