Evidence map›Paper›PMID 23564173›Full record

ArticleJournal of bacteriology2013

Biochemical and structural studies of the Mycobacterium tuberculosis O6-methylguanine methyltransferase and mutated variants.

Riccardo Miggiano, Valentina Casazza, Silvia Garavaglia, Maria Ciaramella, Giuseppe Perugino, Menico Rizzi, Franca Rossi

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. First thermostable CLIP-Computational and structural biotechnology journal · 2022
    Article
  3. Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaiiOActa crystallographica. Section F, Structural biology communications · 2021
    Article
  4. Characterization of the Proteins Involved in the DNA Repair Mechanism inInternational journal of molecular sciences · 2020
    Article
  5. International journal of molecular sciences · 2020
    Review
  6. Targeting Genome Integrity inMolecules (Basel, Switzerland) · 2020
    Review
  7. Article
  8. Article
  9. Review
  10. Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.International journal of molecular sciences · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Riccardo MiggianoDipartimento di Scienze del Farmaco, University of Piemonte Orientale A Avogadro, Novara, Italy.
Valentina Casazza
Silvia Garavaglia
Maria Ciaramella
Giuseppe Perugino
Menico Rizzi
Franca Rossi
Università degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITInstitute of Protein Biochemistry · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium tuberculosis displays remarkable genetic stability despite continuous exposure to the hostile environment represented by the host's infected macrophages. Similarly to other organisms, M. tuberculosis possesses multiple systems to counteract the harmful potential of DNA alkylation. In particular, the suicidal enzyme O(6)-methylguanine-DNA methyltransferase (OGT) is responsible for the direct repair of O(6)-alkylguanine in double-stranded DNA and is therefore supposed to play a central role in protecting the mycobacterial genome from the risk of G · C-to-A · T transition mutations. Notably, a number of geographically widely distributed M. tuberculosis strains shows nonsynonymous single-nucleotide polymorphisms in their OGT-encoding gene, leading to amino acid substitutions at position 15 (T15S) or position 37 (R37L) of the N-terminal domain of the corresponding protein. However, the role of these mutations in M. tuberculosis pathogenesis is unknown. We describe here the in vitro characterization of M. tuberculosis OGT (MtOGT) and of two point-mutated versions of the protein mimicking the naturally occurring ones, revealing that both mutated proteins are impaired in their activity as a consequence of their lower affinity for alkylated DNA than the wild-type protein. The analysis of the crystal structures of MtOGT and MtOGT-R37L confirms the high level of structural conservation of members of this protein family and provides clues to an understanding of the molecular bases for the reduced affinity for the natural substrate displayed by mutated MtOGT. Our in vitro results could contribute to validate the inferred participation of mutated OGTs in M. tuberculosis phylogeny and biology.

Indexed as

Amino Acid SequenceCrystallography, X-RayDNA, BacterialDNA Mutational AnalysisModels, MolecularMolecular Sequence DataMutant ProteinsMutation, MissenseMycobacterium tuberculosisO(6)-Methylguanine-DNA MethyltransferasePoint MutationProtein BindingProtein ConformationDNA, BacterialMutant ProteinsO(6)-Methylguanine-DNA Methyltransferase

Identifiers

PMID23564173
PMCPMC3697256
OpenAlexW2164784743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.