Evidence map›Paper›PMID 23563955›Full record

ArticleApplied and environmental microbiology2013

Growth media simulating ileal and colonic environments affect the intracellular proteome and carbon fluxes of enterohemorrhagic Escherichia coli O157:H7 strain EDL933.

Sabrina Polzin, Claudia Huber, Eva Eylert, Ines Elsenhans, Wolfgang Eisenreich, Herbert Schmidt

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Host-associatedCurrent research in food science · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Simulated Colonic Fluid Replicates theInfection and immunity · 2022
    Article
  9. Article
  10. Article
  11. Bacteriophages of Shiga Toxin-ProducingPathogens (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sabrina PolzinInstitute of Food Science and Biotechnology, Department of Food Microbiology, University of Hohenheim, Stuttgart, Germany.
Claudia Huber
Eva Eylert
Ines Elsenhans
Wolfgang Eisenreich
Herbert Schmidt

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, the intracellular proteome of Escherichia coli O157:H7 strain EDL933 was analyzed by two-dimensional gel electrophoresis and matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) spectrometry after growth in simulated ileal environment media (SIEM) and simulated colonic environment media (SCEM) under aerobic and microaerobic conditions. Differentially expressed intracellular proteins were identified and allocated to functional protein groups. Moreover, metabolic fluxes were analyzed by isotopologue profiling with [U-(13)C(6)]glucose as a tracer. The results of this study show that EDL933 responds with differential expression of a complex network of proteins and metabolic pathways, reflecting the high metabolic adaptability of the strain. Growth in SIEM and SCEM is obviously facilitated by the upregulation of nucleotide biosynthesis pathway proteins and could be impaired by exposition to 50 µM 6-mercaptopurine under aerobic conditions. Notably, various stress and virulence factors, including Shiga toxin, were expressed without having contact with a human host.

Indexed as

Carbon IsotopesCulture MediaElectrophoresis, Gel, Two-DimensionalEnzyme-Linked Immunosorbent AssayEscherichia coli O157Gas Chromatography-Mass SpectrometryGene Expression Regulation, BacterialIntestinesMetabolic Networks and PathwaysPeptide MappingProteomeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCarbon IsotopesCulture MediaProteome

Identifiers

PMID23563955
PMCPMC3675940

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.