Evidence map›Paper›PMID 23563525›Full record

ArticleNature chemical biology2013

Disulfide-bond scanning reveals assembly state and β-strand tilt angle of the PFO β-barrel.

Takehiro K Sato, Rodney K Tweten, Arthur E Johnson

Abstract read
In one paragraph

Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Review
  4. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
  5. Review
  6. Article
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  17. Stonefish toxin defines an ancient branch of the perforin-like superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Takehiro K SatoDepartment of Molecular and Cellular Medicine, Texas A&M Health Science Center, College Station, Texas, USA.
Rodney K Tweten
Arthur E Johnson
Texas A&M Health Science Center · USTexas A&M University · USUniversity of Oklahoma Health Sciences Center · US

Funding

Pore Formation by Cholesterol Dependent CytolysinsR01AI037657 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI TWETEN, RODNEY K. · 1997 to 2015
$5.4M
Pore Formation by Cholesterol Dependent CytolysinsR37AI037657 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI TWETEN, RODNEY K. · 2016 to 2025
$4.8M
NIAID NIH HHS AI-37657NIAID NIH HHS R01 AI037657NIAID NIH HHS R37 AI037657
6 · The paper itself

Abstract

Perfringolysin O (PFO), a bacterial cholesterol-dependent cytolysin, binds a mammalian cell membrane, oligomerizes into a circular prepore complex (PPC) and forms a 250-Å transmembrane β-barrel pore in the cell membrane. Each PFO monomer has two sets of three short α-helices that unfold and ultimately refold into two transmembrane β-hairpin (TMH) components of the membrane-embedded β-barrel. Interstrand disulfide-bond scanning revealed that β-strands in a fully assembled PFO β-barrel were strictly aligned and tilted at 20° to the membrane perpendicular. In contrast, in a low temperature-trapped PPC intermediate, the TMHs were unfolded and had sufficient freedom of motion to interact transiently with each other, yet the TMHs were not aligned or stably hydrogen bonded. The PFO PPC-to-pore transition therefore converts TMHs in a dynamic folding intermediate far above the membrane into TMHs that are hydrogen bonded to those of adjacent subunits in the bilayer-embedded β-barrel.

Indexed as

DisulfidesBacterial ToxinsCell MembraneCholesterolClostridium perfringensCross-Linking ReagentsDimerizationEscherichia coliHemolysin ProteinsLiposomesMolecular ConformationMutationProtein BindingProtein Structure, SecondaryTemperatureTrypsinBacterial ToxinsCholesterolClostridium perfringens theta-toxinCross-Linking ReagentsDisulfidesHemolysin ProteinsLiposomesTrypsin

Identifiers

PMID23563525
PMCPMC3661704
OpenAlexW1996545433

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.