Evidence map›Paper›PMID 23563522›Full record

ArticlePlant cell reports2013

Mapping quantitative trait loci for tissue culture response in VCS3M-DH population of Brassica rapa.

Mi-Suk Seo, Mina Jin, Soo-Seong Lee, Soo-Jin Kwon, Jeong-Hwan Mun, Beom-Seok Park, Richard G F Visser, Guusje Bonnema, Seong-Han Sohn

Abstract read
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In one paragraph

Article in Plant cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Frontiers in plant science · 2020
    Article
  2. Genetic analysis and identification of a candidate gene associated with in vitro regeneration ability of cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  3. Article
  4. Article
  5. Identification and mapping of a novel dominant resistance gene, TuRB07 to Turnip mosaic virus in Brassica rapa.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Mi-Suk SeoDepartment of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, 150 Suin-ro, Gwonseon-gu, Suwon, 441-707, Korea. sms1030@korea.kr
Mina Jin
Soo-Seong Lee
Soo-Jin Kwon
Jeong-Hwan Mun
Beom-Seok Park
Richard G F Visser
Guusje Bonnema
Seong-Han Sohn
Rural Development Administration · KRNational Academy of Agricultural Science · KRWageningen University & Research · NLChung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageQuantitative trait loci (QTL) controlling callus induction and plant regeneration were identified in the VCS3M-DH population of Brassica rapa. Quantitative trait loci (QTL) controlling callus induction and plant regeneration were identified in the VCS3M-DH population of Brassica rapa. The VCS3M-DH population showed wide and continuous variation in callus induction and shoot regeneration. Significant coefficient correlations were detected between these two parameters. Broad-sense heritability (h (2)) for the two traits was around 0.7, indicating genetic regulation of regeneration ability in this population. In the composite interval mapping analysis, two QTLs for callus induction ability, qCi2 and qCi7, were mapped on chromosome A02 and A07, explaining 28.6 % of phenotypic variation. For plant regeneration, four QTLs, qPr6-1 qPr6-2, qPr7, and qPr9 were identified on chromosome A06, A07, and A09, which in total explained 50.1 % of phenotypic variation. Furthermore, 15 putative candidate genes were found on the interval of the six QTLs, which were related to various plant hormones, MADS-box genes, and serine/threonine related genes. These results provide important information to identify genes related to tissue culture ability in B. rapa.

Indexed as

Chromosome MappingTissue Culture TechniquesAnalysis of VarianceBrassicaGenetic Association StudiesHaploidyInheritance PatternsPhenotypePlant ShootsQuantitative Trait LociRegeneration

Identifiers

PMID23563522
OpenAlexW2402146848

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.