Evidence map›Paper›PMID 23563482›Full record

ArticleEukaryotic cell2013

Comparative transcriptomics of infectious spores from the fungal pathogen Histoplasma capsulatum reveals a core set of transcripts that specify infectious and pathogenic states.

Diane O Inglis, Mark Voorhies, Davina R Hocking Murray, Anita Sil

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Infection and immunity · 2023
    Article
  5. Review
  6. Review
  7. Coccidioides Species: A Review of Basic Research: 2022.Journal of fungi (Basel, Switzerland) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Molecular regulation of Histoplasma dimorphism.Current opinion in microbiology · 2019
    Review
  13. Review
  14. Article
  15. Dimorphism and Dissemination ofThe American journal of tropical medicine and hygiene · 2019
    Article
  16. Article
  17. Review
  18. Review
  19. Fungal Strategies to Evade the Host Immune Recognition.Journal of fungi (Basel, Switzerland) · 2017
    Review
  20. Fungi that Infect Humans.Microbiology spectrum · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Diane O InglisDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Mark Voorhies
Davina R Hocking Murray
Anita Sil
University of California, San Francisco · US

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
The role of Listeria cyclic-di-AMP during infection and immunityP01AI063302 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI STANLEY, SARAH A · 2004 to 2025
$45.5M
Gene Circuits that Control Morphology in HistoplasmaR01AI066224 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SIL, ANITA · 2005 to 2019
$5.2M
Gene circuits that control morphology in HistoplasmaR37AI066224 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Anita Sil · 2020 to 2026
$3.3M
Howard Hughes Medical Institute 5300246NIAID NIH HHS P01 AI063302NIAID NIH HHS P01AI063302NIAID NIH HHS R01 AI066224NIAID NIH HHS R01AI066224NIAID NIH HHS R37 AI066224NIAID NIH HHS U54 AI065359NIAID NIH HHS U54AI65359PHS HHS T32A1060537
6 · The paper itself

Abstract

Histoplasma capsulatum is a fungal pathogen that infects both healthy and immunocompromised hosts. In regions where it is endemic, H. capsulatum grows in the soil and causes respiratory and systemic disease when inhaled by humans. An interesting aspect of H. capsulatum biology is that it adopts specialized developmental programs in response to its environment. In the soil, it grows as filamentous chains of cells (mycelia) that produce asexual spores (conidia). When the soil is disrupted, conidia aerosolize and are inhaled by mammalian hosts. Inside a host, conidia germinate into yeast-form cells that colonize immune cells and cause disease. Despite the ability of conidia to initiate infection and disease, they have not been explored on a molecular level. We developed methods to purify H. capsulatum conidia, and we show here that these cells germinate into filaments at room temperature and into yeast-form cells at 37°C. Conidia internalized by macrophages germinate into the yeast form and proliferate within macrophages, ultimately lysing the host cells. Similarly, infection of mice with purified conidia is sufficient to establish infection and yield viable yeast-form cells in vivo. To characterize conidia on a molecular level, we performed whole-genome expression profiling of conidia, yeast, and mycelia from two highly divergent H. capsulatum strains. In parallel, we used homology and protein domain analysis to manually annotate the predicted genes of both strains. Analyses of the resultant data defined sets of transcripts that reflect the unique molecular states of H. capsulatum conidia, yeast, and mycelia.

Indexed as

Gene Expression Regulation, FungalTranscriptomeAnimalsFungal ProteinsGene Expression ProfilingGene Expression Regulation, DevelopmentalHistoplasmaHistoplasmosisHumansMacrophagesMiceMolecular Sequence AnnotationMyceliumRNA, FungalRNA, MessengerSpores, FungalFungal ProteinsRNA, FungalRNA, Messenger

Identifiers

PMID23563482
PMCPMC3675998
OpenAlexW2170755663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.