Evidence map›Paper›PMID 23562819›Full record

ArticleHuman molecular genetics2013

Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits.

Mete Civelek, Raffi Hagopian, Calvin Pan, Nam Che, Wen-pin Yang, Paul S Kayne, Niyas K Saleem, Henna Cederberg, Johanna Kuusisto, Peter S Gargalovic and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Role of microRNA-22 in Metabolism.International journal of molecular sciences · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. MicroRNA-22 Is a Key Regulator of Lipid and Metabolic Homeostasis.International journal of molecular sciences · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Mete CivelekDepartment of Medicine, University of California, Los Angeles, CA 90095, USA
Raffi Hagopian
Calvin Pan
Nam Che
Wen-pin Yang
Paul S Kayne
Niyas K Saleem
Henna Cederberg
Johanna Kuusisto
Peter S Gargalovic
Todd G Kirchgessner
Markku Laakso
Aldons J Lusis
University of Eastern Finland · FIBristol-Myers Squibb (United States) · USUniversity of California, Los Angeles · US

Funding

Systems genomics of metabolic syndrome traitsP01HL028481 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUE, KAREN · 1985 to 2019
$50.2M
Vascular Biology Training GrantT32HL069766 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 2002 to 2022
$7.4M
NHLBI NIH HHS HL28481NHLBI NIH HHS P01 HL028481NHLBI NIH HHS T32 HL069766NHLBI NIH HHS T32HL69766
6 · The paper itself

Abstract

The genetics of messenger RNA (mRNA) expression has been extensively studied in humans and other organisms, but little is known about genetic factors contributing to microRNA (miRNA) expression. We examined natural variation of miRNA expression in adipose tissue in a population of 200 men who have been carefully characterized for metabolic syndrome (MetSyn) phenotypes as part of the Metabolic Syndrome in Men (METSIM) study. We genotyped the subjects using high-density single-nucleotide polymorphism microarrays and quantified the mRNA abundance using genome-wide expression arrays and miRNA abundance using next-generation sequencing. We reliably quantified 356 miRNA species that were expressed in human adipose tissue, a limited number of which made up most of the expressed miRNAs. We mapped the miRNA abundance as an expression quantitative trait and determined cis regulation of expression for nine of the miRNAs and of the processing of one miRNA (miR-28). The degree of genetic variation of miRNA expression was substantially less than that of mRNAs. For the majority of the miRNAs, genetic regulation of expression was independent of the expression of mRNA from which the miRNA is transcribed. We also showed that for 108 miRNAs, mapped reads displayed widespread variation from the canonical sequence. We found a total of 24 miRNAs to be significantly associated with MetSyn traits. We suggest a regulatory role for miR-204-5p which was predicted to inhibit acetyl coenzyme A carboxylase β, a key fatty acid oxidation enzyme that has been shown to play a role in regulating body fat and insulin resistance in adipose tissue.

Indexed as

Gene Expression RegulationQuantitative Trait, HeritableAdipose TissueGenetic Association StudiesHumansMetabolic SyndromeMicroRNAsPhenotypePolymorphism, Single NucleotideQuantitative Trait LociRNA InterferenceRNA Processing, Post-TranscriptionalTranscription, GeneticTranscriptomeMicroRNAs

Identifiers

PMID23562819
PMCPMC3699064
OpenAlexW2103498542

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.