Evidence map›Paper›PMID 23562395›Full record

ArticleStructure (London, England : 1993)2013

Conformational dynamics of the Rpt6 ATPase in proteasome assembly and Rpn14 binding.

Aaron Ehlinger, Soyeon Park, Amr Fahmy, Jeffrey W Lary, James L Cole, Daniel Finley, Kylie J Walters

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Proteasome Structure and Assembly.Journal of molecular biology · 2017
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. 1.15 Å resolution structure of the proteasome-assembly chaperone Nas2 PDZ domain.Acta crystallographica. Section F, Structural biology communications · 2014
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Aaron EhlingerDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.
Soyeon Park
Amr Fahmy
Jeffrey W Lary
James L Cole
Daniel Finley
Kylie J Walters
Harvard University · USUniversity of Connecticut · USUniversity of Minnesota · US

Funding

Ubiquitin signaling for protein degradationZIABC011490 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WALTERS, KYLIE · 2013 to 2025
$21.1M
Functional Analysis of the Proteasome BaseR37GM043601 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI FINLEY, DANIEL J · 2004 to 2013
$5.9M
UBIQUITIN-PROTEIN CONJUGATES AND FUSIONSR01GM043601 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI FINLEY, DANIEL J · 1990 to 2020
$4.3M
Linking proteasome activity to DNA repair through hHR23R01CA097004 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WALTERS, KYLIE J. · 2003 to 2012
$2.4M
NMR Structural Studies of Ubiquitin Receptor Protein ComplexesR01CA136472 · NCI · UNIVERSITY OF MINNESOTA · PI WALTERS, KYLIE J. · 2010 to 2013
$1.1M
NCI NIH HHS CA097004NCI NIH HHS CA136472NCI NIH HHS R01 CA097004NCI NIH HHS R01 CA136472NIGMS NIH HHS GM043601NIGMS NIH HHS R01 GM043601NIGMS NIH HHS R37 GM043601
6 · The paper itself

Abstract

Juxtaposed to either or both ends of the proteasome core particle (CP) can exist a 19S regulatory particle (RP) that recognizes and prepares ubiquitinated proteins for proteolysis. RP triphosphatase proteins (Rpt1-Rpt6), which are critical for substrate translocation into the CP, bind chaperone-like proteins (Hsm3, Nas2, Nas6, and Rpn14) implicated in RP assembly. We used NMR and other biophysical methods to reveal that S. cerevisiae Rpt6's C-terminal domain undergoes dynamic helix-coil transitions enabled by helix-destabilizing glycines within its two most C-terminal α helices. Rpn14 binds selectively to Rpt6's four-helix bundle, with surprisingly high affinity. Loss of Rpt6's partially unfolded state by glycine substitution (Rpt6 G³⁶⁰,³⁸⁷A) disrupts holoenzyme formation in vitro, an effect enhanced by Rpn14. S. cerevisiae lacking Rpn14 and incorporating Rpt6 G³⁶⁰,³⁸⁷A demonstrate hallmarks of defective proteasome assembly and synthetic growth defects. Rpt4 and Rpt5 exhibit similar exchange, suggesting that conserved structural heterogeneity among Rpt proteins may facilitate RP-CP assembly.

Indexed as

Adenosine TriphosphatasesBinding SitesCarrier ProteinsGlycineModels, MolecularProteasome Endopeptidase ComplexProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesCarrier ProteinsGlycineProteasome Endopeptidase ComplexRpn14 protein, S cerevisiaeRPT6 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID23562395
PMCPMC3670613
OpenAlexW1993447947

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.