ArticlePloS one2013
Transcriptome analysis of the differentially expressed genes in the male and female shrub willows (Salix suchowensis).
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- MMGS: a novel genomic prediction framework to integrate genotype, environment and their interactions for multi-environment breeding trials.Horticulture research · 2026Article
- NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer.Genomics & informatics · 2022Article
- Mapping the sex determination region in the Salix F1 hybrid common parent population confirms a ZW system in six diverse species.G3 (Bethesda, Md.) · 2022Article
- Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.Horticulture research · 2021Article
- Transcriptomic differences between male and female Trachycarpus fortunei.Scientific reports · 2020Article
- Genome-wide analysis of microsatellite and sex-linked marker identification in Gleditsia sinensis.BMC plant biology · 2020Article
- Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb.Annals of botany · 2019Article
- Comparative genomics and transcriptomics analysis reveals evolution patterns of selection in the Salix phylogeny.BMC genomics · 2019Article
- Article
- Article
- Article
- Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses.Molecules (Basel, Switzerland) · 2017Article
- Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome.Genome biology and evolution · 2017Article
- Comparative transcriptome analysis reveals differentially expressed genes associated with sex expression in garden asparagus (Asparagus officinalis).BMC plant biology · 2017Article
- Detecting the Candidate Gender Determinants by Bioinformatic Prediction of miRNAs and Their Targets from Transcriptome Sequences of the Male and Female Flowers inBioMed research international · 2017Article
- Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plantPeerJ · 2017Article
- Transcriptome Profile Analysis from Different Sex Types of Ginkgo biloba L.Frontiers in plant science · 2016Article
- The Quest for Molecular Regulation Underlying Unisexual Flower Development.Frontiers in plant science · 2016Review
- Confirmation of Single-Locus Sex Determination and Female Heterogamety in Willow Based on Linkage Analysis.PloS one · 2016Article
- Characterization of early transcriptional responses to cadmium in the root and leaf of Cd-resistant Salix matsudana Koidz.BMC genomics · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe dioecious system is relatively rare in plants. Shrub willow is an annual flowering dioecious woody plant, and possesses many characteristics that lend it as a great model for tracking the missing pieces of sex determination evolution. To gain a global view of the genes differentially expressed in the male and female shrub willows and to develop a database for further studies, we performed a large-scale transcriptome sequencing of flower buds which were separately collected from two types of sexes.
resultsTotally, 1,201,931 high quality reads were obtained, with an average length of 389 bp and a total length of 467.96 Mb. The ESTs were assembled into 29,048 contigs, and 132,709 singletons. These unigenes were further functionally annotated by comparing their sequences to different proteins and functional domain databases and assigned with Gene Ontology (GO) terms. A biochemical pathway database containing 291 predicted pathways was also created based on the annotations of the unigenes. Digital expression analysis identified 806 differentially expressed genes between the male and female flower buds. And 33 of them located on the incipient sex chromosome of Salicaceae, among which, 12 genes might involve in plant sex determination empirically. These genes were worthy of special notification in future studies.
conclusionsIn this study, a large number of EST sequences were generated from the flower buds of a male and a female shrub willow. We also reported the differentially expressed genes between the two sex-type flowers. This work provides valuable information and sequence resources for uncovering the sex determining genes and for future functional genomics analysis of Salicaceae spp.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.