Evidence map›Paper›PMID 23559746›Full record

ArticleBioinformation2013

Molecular characterization of α-amylase from Staphylococcus aureus.

Hanumanthu Prasanna Lakshmi, Uppu Venkateswara Prasad, Sthanikam Yeswanth, Vimjam Swarupa, Osuru Hari Prasad, Mangamoori Lakshmi Narasu, Potukuchi Venkata Gurunadha Krishna Sarma

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. Thymoquinone/β-Frontiers in cellular and infection microbiology · 2025
    Article
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  12. Detection of Methicillin-ResistantFoods (Basel, Switzerland) · 2023
    Article
  13. Development ofFrontiers in microbiology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Thermal adaptation of α-amylases: a review.Extremophiles : life under extreme conditions · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hanumanthu Prasanna LakshmiDepartment of Biotechnology, Sri Venkateswara Institute of Medical Sciences, Tirupati-517 507, AP, India.
Uppu Venkateswara Prasad
Sthanikam Yeswanth
Vimjam Swarupa
Osuru Hari Prasad
Mangamoori Lakshmi Narasu
Potukuchi Venkata Gurunadha Krishna Sarma
Sri Venkateswara Institute of Medical Sciences · INJawaharlal Nehru Technological University, Hyderabad · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus aureus is one of the prominent Gram positive human pathogen secretes many surface and secretary proteins including various enzymes and pathogenic factors that favour the successful colonization and infection of host tissue. α-amylase is one of the enzymes secreted by S. aureus which catalyses the breakdown of complex sugars to monosaccharides, which are required for colonization and survival of this pathogen in any anatomical locales. In the present study we have cloned, sequenced, expressed and characterized α-amylase gene from S. aureus ATCC12600. The recombinant enzyme has a molecular weight of 58kDa and the kinetics showed Vmax 0.0208±0.033 (mg/ml)/mg/min and Km 10.633±0.737mg/ml. The multiple sequence analysis showed α- amylase of S. aureus exhibited large differences with Bacillus subtilis and Streptococcus bovis. As the crystal structure of S. aureus α- amylase was unavailable, we used homology modelling method to build the structure. The built structure was validated by Ramachandran plot which showed 90% of the residues in the allowed region while no residue was found in the disallowed region and the built structure was close to the crystal structure with Z-Score: -6.85. The structural superimposition studies with α- amylases of Bacillus subtilis and Streptococcus bovis showed distinct differences with RMSD values of 18.158Åand 7.091Å respectively which correlated with enzyme kinetics, indicating α-amylase is different among these bacteria.

Indexed as

KmRMSDVmaxZ-scoreα-amylase

Identifiers

PMID23559746
PMCPMC3607186
OpenAlexW2025975078

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.