Evidence map›Paper›PMID 23559409›Full record

ArticleHuman genetics2013

Identification of 99 novel mutations in a worldwide cohort of 1,056 patients with a nephronophthisis-related ciliopathy.

Jan Halbritter, Jonathan D Porath, Katrina A Diaz, Daniela A Braun, Stefan Kohl, Moumita Chaki, Susan J Allen, Neveen A Soliman, Friedhelm Hildebrandt, Edgar A Otto and 1 more

Abstract read
In one paragraph

Article in Human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed, 2 pooled it
16.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 2 syntheses or guidelines pooled it, 234 citations in OpenAlex.

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85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jan HalbritterDepartment of Pediatrics, University of Michigan Health System, 8220A MSRB III, 1150 West Medical Center Drive, Ann Arbor, MI 48109-5646, USA.
Jonathan D Porath
Katrina A Diaz
Daniela A Braun
Stefan Kohl
Moumita Chaki
Susan J Allen
Neveen A Soliman
Friedhelm Hildebrandt
Edgar A Otto
GPN Study Group
University of Michigan · USHoward Hughes Medical Institute · USCairo University · EG

Funding

Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Identifying all Meckel-like ciliopathy genes by established total exome capture aRC4DK090917 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OTTO, EDGAR A · 2010 to 2010
$1.2M
NIDDK NIH HHS R01 DK068306NIDDK NIH HHS RC4 DK090917NIDDK NIH HHS RC4-DK090917
6 · The paper itself

Abstract

Nephronophthisis-related ciliopathies (NPHP-RC) are autosomal-recessive cystic kidney diseases. More than 13 genes are implicated in its pathogenesis to date, accounting for only 40 % of all cases. High-throughput mutation screenings of large patient cohorts represent a powerful tool for diagnostics and identification of novel NPHP genes. We here performed a new high-throughput mutation analysis method to study 13 established NPHP genes (NPHP1-NPHP13) in a worldwide cohort of 1,056 patients diagnosed with NPHP-RC. We first applied multiplexed PCR-based amplification using Fluidigm Access-Array™ technology followed by barcoding and next-generation resequencing on an Illumina platform. As a result, we established the molecular diagnosis in 127/1,056 independent individuals (12.0 %) and identified a single heterozygous truncating mutation in an additional 31 individuals (2.9 %). Altogether, we detected 159 different mutations in 11 out of 13 different NPHP genes, 99 of which were novel. Phenotypically most remarkable were two patients with truncating mutations in INVS/NPHP2 who did not present as infants and did not exhibit extrarenal manifestations. In addition, we present the first case of Caroli disease due to mutations in WDR19/NPHP13 and the second case ever with a recessive mutation in GLIS2/NPHP7. This study represents the most comprehensive mutation analysis in NPHP-RC patients, identifying the largest number of novel mutations in a single study worldwide.

Indexed as

Adaptor Proteins, Signal TransducingCaroli DiseaseCiliaCohort StudiesCytoskeletal ProteinsDNA Mutational AnalysisFemaleGenes, RecessiveGlobal HealthHigh-Throughput Nucleotide SequencingHumansKidney Diseases, CysticMaleMembrane ProteinsMultiplex Polymerase Chain ReactionMutationAdaptor Proteins, Signal TransducingCytoskeletal ProteinsMembrane ProteinsNPHP1 protein, human

Identifiers

PMID23559409
PMCPMC4643834
OpenAlexW2009022368

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.