Evidence map›Paper›PMID 23559253›Full record

ArticleScience (New York, N.Y.)2013

Transposition-driven genomic heterogeneity in the Drosophila brain.

Paola N Perrat, Shamik DasGupta, Jie Wang, William Theurkauf, Zhiping Weng, Michael Rosbash, Scott Waddell

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Article
  4. Transcriptional predictors of rescue behaviour in ants.The Journal of experimental biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Retrotransposons in embryogenesis and neurodevelopment.Biochemical Society transactions · 2024
    Review
  19. Review
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Paola N PerratDepartment of Neurobiology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Shamik DasGupta
Jie Wang
William Theurkauf
Zhiping Weng
Michael Rosbash
Scott Waddell

Funding

THE MOLECULAR GENETIC BASIS OF SENSORY BEHAVIOR IN DROSOPHILAP01NS044232 · NINDS · BRANDEIS UNIVERSITY · PI GRIFFITH, LESLIE C · 2002 to 2011
$13.2M
RNA localization and translational controlR01HD049116 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI THEURKAUF, WILLIAM EDWARD · 2005 to 2024
$10.8M
Mouse CoreP30NS045713 · NINDS · BRANDEIS UNIVERSITY · PI ROSBASH, MICHAEL · 2003 to 2013
$7.8M
Mechanisms of Memory ConsolidationR01MH069883 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI REPPERT, STEVEN M. · 2004 to 2012
$2.8M
Motivational control of appetitive memoryR01MH081982 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WADDELL, SCOTT · 2008 to 2012
$1.5M
Howard Hughes Medical InstituteNICHD NIH HHS R01 HD049116NICHD NIH HHS R01HD049116NIMH NIH HHS MH069883NIMH NIH HHS MH081982NIMH NIH HHS R01 MH069883NIMH NIH HHS R01 MH081982NINDS NIH HHS NS044232NINDS NIH HHS NS045713NINDS NIH HHS P01 NS044232NINDS NIH HHS P30 NS045713Wellcome Trust 090309Wellcome Trust 090924
6 · The paper itself

Abstract

Recent studies in mammals have documented the neural expression and mobility of retrotransposons and have suggested that neural genomes are diverse mosaics. We found that transposition occurs among memory-relevant neurons in the Drosophila brain. Cell type-specific gene expression profiling revealed that transposon expression is more abundant in mushroom body (MB) αβ neurons than in neighboring MB neurons. The Piwi-interacting RNA (piRNA) proteins Aubergine and Argonaute 3, known to suppress transposons in the fly germline, are expressed in the brain and appear less abundant in αβ MB neurons. Loss of piRNA proteins correlates with elevated transposon expression in the brain. Paired-end deep sequencing identified more than 200 de novo transposon insertions in αβ neurons, including insertions into memory-relevant loci. Our observations indicate that genomic heterogeneity is a conserved feature of the brain.

Indexed as

Gene Expression RegulationAnimalsArgonaute ProteinsBrainDrosophila melanogasterDrosophila ProteinsGenome, InsectMushroom BodiesNeuronsPeptide Initiation FactorsRetroelementsRNA, Small InterferingTranscriptomeAGO3 protein, DrosophilaArgonaute Proteinsaub protein, DrosophilaDrosophila ProteinsPeptide Initiation FactorsRetroelementsRNA, Small Interfering

Identifiers

PMID23559253
PMCPMC3887341

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.