Evidence map›Paper›PMID 23556014›Full record

ArticlePLoS neglected tropical diseases2013

A cell-surface phylome for African trypanosomes.

Andrew P Jackson, Harriet C Allison, J David Barry, Mark C Field, Christiane Hertz-Fowler, Matthew Berriman

Open access · goldAbstract readComparative Study
In one paragraph

Article in PLoS neglected tropical diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Functional Studies of Kinetoplastid Transporters.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Drug resistance in animal trypanosomiases: Epidemiology, mechanisms and control strategies.International journal for parasitology. Drugs and drug resistance · 2024
    Review
  11. Article
  12. Review
  13. A transferrin receptor's guide to African trypanosomes.Cell surface (Amsterdam, Netherlands) · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Cloning and Characterization ofInternational journal of molecular sciences · 2023
    Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Andrew P JacksonPathogen Genomics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, England, United Kingdom. a.p.jackson@liv.ac.uk
Harriet C Allison
J David Barry
Mark C Field
Christiane Hertz-Fowler
Matthew Berriman
University of Cambridge · GBWellcome Sanger Institute · GBUniversity of Glasgow · GBUniversity of Liverpool · GB

Funding

Wellcome TrustWellcome Trust 055558/Z/98/AWellcome Trust 055558/Z/98/CWellcome Trust 085349/Z/08/ZWellcome Trust 085775/Z/08/Z
6 · The paper itself

Abstract

The cell surface of Trypanosoma brucei, like many protistan blood parasites, is crucial for mediating host-parasite interactions and is instrumental to the initiation, maintenance and severity of infection. Previous comparisons with the related trypanosomatid parasites T. cruzi and Leishmania major suggest that the cell-surface proteome of T. brucei is largely taxon-specific. Here we compare genes predicted to encode cell surface proteins of T. brucei with those from two related African trypanosomes, T. congolense and T. vivax. We created a cell surface phylome (CSP) by estimating phylogenies for 79 gene families with putative surface functions to understand the more recent evolution of African trypanosome surface architecture. Our findings demonstrate that the transferrin receptor genes essential for bloodstream survival in T. brucei are conserved in T. congolense but absent from T. vivax and include an expanded gene family of insect stage-specific surface glycoproteins that includes many currently uncharacterized genes. We also identify species-specific features and innovations and confirm that these include most expression site-associated genes (ESAGs) in T. brucei, which are absent from T. congolense and T. vivax. The CSP presents the first global picture of the origins and dynamics of cell surface architecture in African trypanosomes, representing the principal differences in genomic repertoire between African trypanosome species and provides a basis from which to explore the developmental and pathological differences in surface architectures. All data can be accessed at: http://www.genedb.org/Page/trypanosoma_surface_phylome.

Indexed as

Computational BiologyEvolution, MolecularMembrane ProteinsProtozoan ProteinsTrypanosoma brucei bruceiTrypanosoma congolenseTrypanosoma cruziTrypanosoma vivaxMembrane ProteinsProtozoan Proteins

Identifiers

PMID23556014
PMCPMC3605285
OpenAlexW2020963223

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.