Evidence map›Paper›PMID 23555823›Full record

ArticlePloS one2013

Polypeptone induces dramatic cell lysis in ura4 deletion mutants of fission yeast.

Yuzy Matsuo, Kouhei Nishino, Kouhei Mizuno, Takashi Akihiro, Takashi Toda, Yasuhiro Matsuo, Tomohiro Kaino, Makoto Kawamukai

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Yuzy MatsuoDepartment of Life Science and Biotechnology, Faculty of Life and Environmental Science, Shimane University, Matsue, Japan.
Kouhei Nishino
Kouhei Mizuno
Takashi Akihiro
Takashi Toda
Yasuhiro Matsuo
Tomohiro Kaino
Makoto Kawamukai
Shimane University · JPCancer Research UK · GB

Funding

Cancer Research UK 15670
6 · The paper itself

Abstract

Polypeptone is widely excluded from Schizosaccharomyces pombe growth medium. However, the reasons why polypeptone should be avoided have not been documented. Polypeptone dramatically induced cell lysis in the ura4 deletion mutant when cells approached the stationary growth phase, and this phenotype was suppressed by supplementation of uracil. To determine the specificity of this cell lysis phenotype, we created deletion mutants of other genes involved in de novo biosynthesis of uridine monophosphate (ura1, ura2, ura3, and ura5). Cell lysis was not observed in these gene deletion mutants. In addition, concomitant disruption of ura1, ura2, ura3, or ura5 in the ura4 deletion mutant suppressed cell lysis, indicating that cell lysis induced by polypeptone is specific to the ura4 deletion mutant. Furthermore, cell lysis was also suppressed when the gene involved in coenzyme Q biosynthesis was deleted. This is likely because Ura3 requires coenzyme Q for its activity. The ura4 deletion mutant was sensitive to zymolyase, which mainly degrades (1,3)-beta-D glucan, when grown in the presence of polypeptone, and cell lysis was suppressed by the osmotic stabiliser, sorbitol. Finally, the induction of cell lysis in the ura4 deletion mutant was due to the accumulation of orotidine-5-monophosphate. Cell wall integrity was dramatically impaired in the ura4 deletion mutant when grown in the presence of polypeptone. Because ura4 is widely used as a selection marker in S. pombe, caution needs to be taken when evaluating phenotypes of ura4 mutants.

Indexed as

Gene DeletionAlkaline PhosphataseBacterial ProteinsCell WallChromatography, LiquidGenetic MarkersGlucan Endo-1,3-beta-D-GlucosidaseLuminescent ProteinsMass SpectrometryModels, GeneticOsmosisPeptonesPhenotypeSaccharomyces cerevisiaeSchizosaccharomycesSchizosaccharomyces pombe ProteinsAlkaline PhosphataseBacterial ProteinsGenetic MarkersGlucan Endo-1,3-beta-D-GlucosidaseLuminescent ProteinsPeptonesSchizosaccharomyces pombe Proteinsura4 protein, S pombeyellow fluorescent protein, Bacteria

Identifiers

PMID23555823
PMCPMC3605382
OpenAlexW2060226461

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.