Evidence map›Paper›PMID 23555820›Full record

ArticlePloS one2013

Nutrition metabolism plays an important role in the alternate bearing of the olive tree (Olea europaea L.).

Mine Turktas, Behcet Inal, Sezer Okay, Emine Gulden Erkilic, Ekrem Dundar, Pilar Hernandez, Gabriel Dorado, Turgay Unver

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mine TurktasFaculty of Science, Department of Biology, Cankiri Karatekin University, Cankiri, Turkey.
Behcet Inal
Sezer Okay
Emine Gulden Erkilic
Ekrem Dundar
Pilar Hernandez
Gabriel Dorado
Turgay Unver

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The olive tree (Olea europaea L.) is widely known for its strong tendency for alternate bearing, which severely affects the fruit yield from year to year. Microarray based gene expression analysis using RNA from olive samples (on-off years leaves and ripe-unripe fruits) are particularly useful to understand the molecular mechanisms influencing the periodicity in the olive tree. Thus, we carried out genome wide transcriptome analyses involving different organs and temporal stages of the olive tree using the NimbleGen Array containing 136,628 oligonucleotide probe sets. Cluster analyses of the genes showed that cDNAs originated from different organs could be sorted into separate groups. The nutritional control had a particularly remarkable impact on the alternate bearing of olive, as shown by the differential expression of transcripts under different temporal phases and organs. Additionally, hormonal control and flowering processes also played important roles in this phenomenon. Our analyses provide further insights into the transcript changes between "on year" and "off year" leaves along with the changes from unrpipe to ripe fruits, which shed light on the molecular mechanisms underlying the olive tree alternate bearing. These findings have important implications for the breeding and agriculture of the olive tree and other crops showing periodicity. To our knowledge, this is the first study reporting the development and use of an olive array to document the gene expression profiling associated with the alternate bearing in olive tree.

Indexed as

Gene Expression Regulation, PlantTranscriptomeCluster AnalysisFruitGene Expression ProfilingGenes, PlantNucleic Acid HybridizationOleaOligonucleotide Array Sequence AnalysisOligonucleotide ProbesOxygenPlant LeavesTranscription, GeneticOligonucleotide ProbesOxygen

Identifiers

PMID23555820
PMCPMC3610735

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.