Evidence map›Paper›PMID 23555235›Full record

ArticlePLoS computational biology2013

An integrated computational/experimental model of lymphoma growth.

Hermann B Frieboes, Bryan R Smith, Yao-Li Chuang, Ken Ito, Allison M Roettgers, Sanjiv S Gambhir, Vittorio Cristini

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  8. Cancer Immunotherapy Getting Brainy: Visualizing the Distinctive CNS Metastatic Niche to Illuminate Therapeutic Resistance.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2017
    Review
  9. Model of vascular desmoplastic multispecies tumor growth.Journal of theoretical biology · 2017
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Progress Towards Computational 3-D Multicellular Systems Biology.Advances in experimental medicine and biology · 2016
    Review
  15. Review
  16. Article
  17. Article
  18. Integrated PK-PD and agent-based modeling in oncology.Journal of pharmacokinetics and pharmacodynamics · 2015
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hermann B FrieboesDepartment of Bioengineering, University of Louisville, Louisville, Kentucky, United States of America. hbfrie01@louisville.edu
Bryan R Smith
Yao-Li Chuang
Ken Ito
Allison M Roettgers
Sanjiv S Gambhir
Vittorio Cristini
Stanford University · USUniversity of New Mexico · USUniversity of Louisville · US

Funding

Stanford Nanocharacterization LaboratoryU54CA119367 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2006 to 2010
$19.8M
Small Animal ImagingP50CA114747 · NCI · STANFORD UNIVERSITY · PI CONTAG, CHRISTOPHER H · 2005 to 2014
$18.2M
TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI NOLAN, GARRY P · 2009 to 2013
$15.2M
Pilot ProjectsU54CA151459 · NCI · STANFORD UNIVERSITY · PI GAMBHIR, SANJIV S · 2010 to 2014
$12.6M
Texas Center for Cancer NanomedicineU54CA151668 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI FERRARI, MAURO · 2010 to 2014
$12.4M
Reporter Imaging of Protein-Protein InteractionsR01CA082214 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GAMBHIR, SANJIV S · 1999 to 2019
$5.9M
How do Nanoparticles Target Cancer? An In Vivo Experimental/Mathematical StudyK99CA160764 · NCI · STANFORD UNIVERSITY · PI SMITH, BRYAN RONAIN · 2011 to 2012
$348k
NCI NIH HHS 1U54CA151668NCI NIH HHS K99 CA160764NCI NIH HHS P50 CA114747NCI NIH HHS P50CA114747NCI NIH HHS R01 CA082214NCI NIH HHS U54 CA119367NCI NIH HHS U54 CA143907NCI NIH HHS U54CA143907NCI NIH HHS U54 CA151459NCI NIH HHS U54 CA151668NCI NIH HHS U54 U54CA151459
6 · The paper itself

Abstract

Non-Hodgkin's lymphoma is a disseminated, highly malignant cancer, with resistance to drug treatment based on molecular- and tissue-scale characteristics that are intricately linked. A critical element of molecular resistance has been traced to the loss of functionality in proteins such as the tumor suppressor p53. We investigate the tissue-scale physiologic effects of this loss by integrating in vivo and immunohistological data with computational modeling to study the spatiotemporal physical dynamics of lymphoma growth. We compare between drug-sensitive Eμ-myc Arf-/- and drug-resistant Eμ-myc p53-/- lymphoma cell tumors grown in live mice. Initial values for the model parameters are obtained in part by extracting values from the cellular-scale from whole-tumor histological staining of the tumor-infiltrated inguinal lymph node in vivo. We compare model-predicted tumor growth with that observed from intravital microscopy and macroscopic imaging in vivo, finding that the model is able to accurately predict lymphoma growth. A critical physical mechanism underlying drug-resistant phenotypes may be that the Eμ-myc p53-/- cells seem to pack more closely within the tumor than the Eμ-myc Arf-/- cells, thus possibly exacerbating diffusion gradients of oxygen, leading to cell quiescence and hence resistance to cell-cycle specific drugs. Tighter cell packing could also maintain steeper gradients of drug and lead to insufficient toxicity. The transport phenomena within the lymphoma may thus contribute in nontrivial, complex ways to the difference in drug sensitivity between Eμ-myc Arf-/- and Eμ-myc p53-/- tumors, beyond what might be solely expected from loss of functionality at the molecular scale. We conclude that computational modeling tightly integrated with experimental data gives insight into the dynamics of Non-Hodgkin's lymphoma and provides a platform to generate confirmable predictions of tumor growth.

Indexed as

Models, BiologicalAnimalsAntineoplastic AgentsApoptosisCalibrationCell ProliferationCell SurvivalComputational BiologyCyclophosphamideDisease ProgressionDoxorubicinDrug Resistance, NeoplasmImmunohistochemistryLymphoma, Non-HodgkinMiceMice, Inbred C57BLAntineoplastic AgentsCyclophosphamideDoxorubicinTumor Suppressor Protein p53

Identifiers

PMID23555235
PMCPMC3610621
OpenAlexW2024360005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.