Evidence map›Paper›PMID 23555189›Full record

ArticleNeoplasia (New York, N.Y.)2013

Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.

Zhuo Chen, Jielin Sun, Seong-Tae Kim, Jack Groskopf, Junjie Feng, William B Isaacs, Roger S Rittmaster, Lynn D Condreay, Siqun Lilly Zheng, Jianfeng Xu

Open access · goldAbstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Zhuo ChenCenter for Cancer Genomics, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Jielin Sun
Seong-Tae Kim
Jack Groskopf
Junjie Feng
William B Isaacs
Roger S Rittmaster
Lynn D Condreay
Siqun Lilly Zheng
Jianfeng Xu
Wake Forest University · USGlaxoSmithKline (United States) · USJohns Hopkins University · USResearch Triangle Park Foundation · US

Funding

Clinical validity and utility of genomic targeted chemoprevention of PCaUC2CA148463 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2010 to 2010
$2.0M
Clinical validity and utility of genomic targeted chemoprevention of PCaRC2CA148463 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2009 to 2009
$2.0M
NCI NIH HHS CA148463NCI NIH HHS RC2 CA148463NCI NIH HHS UC2 CA148463
6 · The paper itself

Abstract

Prostate cancer gene 3 (PCA3) is a non-coding gene specifically overexpressed in prostate cancer (PCa) that has great potential as a clinical biomarker for predicting prostate biopsy outcome. However, genetic determinants of PCA3 expression level remain unknown. To investigate the association between genetic variants and PCA3 mRNA level, a genome-wide association study was conducted in 1371 men of European descent in the REduction by DUtasteride of prostate Cancer Events trial. First-voided urine specimens containing prostate cells were obtained after digital rectal examination. The PROGENSA PCA3 assay was used to determine PCA3 score in the urinary samples. A linear regression model was used to detect the associations between (single nucleotide polymorphisms) SNPs and PCA3 score under an additive genetic model, adjusting for age and population stratification. Two SNPs, rs10993994 in β-microseminoprotein at 10q11.23 and rs10424878 in kallikrein-related peptidase 2 at 19q13.33, were associated with PCA3 score at genome-wide significance level (P = 1.22 x 10(-9) and 1.06 x 10(-8), respectively). Men carrying the rs10993994 "T" allele or rs10424878 "A" allele had higher PCA3 score compared with men carrying rs10993994 "C" allele or rs10424878 "G" allele (β = 1.25 and 1.24, respectively). This is the first comprehensive search for genetic determinants of PCA3 score. The novel loci identified may provide insight into the molecular mechanisms of PCA3 expression as a potential marker of PCa.

Indexed as

AgedAntigens, NeoplasmBiomarkers, TumorGenetic LociGenome-Wide Association StudyHumansMaleMiddle AgedPolymorphism, Single NucleotideProstatic NeoplasmsProstatic Secretory ProteinsRandomized Controlled Trials as TopicSequence Analysis, DNATissue KallikreinsAntigens, Neoplasmbeta-microseminoproteinBiomarkers, Tumorprostate cancer antigen 3, humanProstatic Secretory ProteinsTissue Kallikreins

Identifiers

PMID23555189
PMCPMC3612916
OpenAlexW1753475264

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.