Evidence map›Paper›PMID 23554881›Full record

ArticlePloS one2013

CovR and VicRK regulate cell surface biogenesis genes required for biofilm formation in Streptococcus mutans.

Rafael N Stipp, Heike Boisvert, Daniel J Smith, José F Höfling, Margaret J Duncan, Renata O Mattos-Graner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Synergistic action of specialized metabolites from divergent biosynthesis in the human oral microbiome.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Inhibition ofFrontiers in microbiology · 2025
    Article
  9. Characterization of MreCD inJournal of oral microbiology · 2025
    Article
  10. Anticariogenic activity of marine brown algaeFrontiers in cellular and infection microbiology · 2024
    Article
  11. Article
  12. Small regulatory RNAs are mediators of theJournal of bacteriology · 2023
    Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rafael N StippDepartment of Oral Diagnosis, Piracicaba Dental School, University of Campinas - UNICAMP, Sao Paolo, Brazil.
Heike Boisvert
Daniel J Smith
José F Höfling
Margaret J Duncan
Renata O Mattos-Graner
Universidade Estadual de Campinas (UNICAMP) · BR

Funding

Genomics of Gene Regulation in Porphyromonas gingivalisR01DE015931 · NIDCR · FORSYTH INSTITUTE · PI DUNCAN, MARGARET J · 2004 to 2012
$4.4M
CHILDHOOD VACCINES AND DENTAL CARIES IMMUNITYR37DE006153 · NIDCR · FORSYTH INSTITUTE · PI SMITH, DANIEL JAMES · 1998 to 2007
$3.9M
Muscosal Immunity in Heavily S. Mutans Exposed ChildrenR03TW006324 · FIC · FORSYTH INSTITUTE · PI SMITH, DANIEL JAMES · 2004 to 2005
$97k
FIC NIH HHS R03 TW006324FIC NIH HHS R03-TW-06324NIDCR NIH HHS R01 DE015931NIDCR NIH HHS R01 DE15931NIDCR NIH HHS R37 DE006153NIDCR NIH HHS R37 DE06153
6 · The paper itself

Abstract

The two-component system VicRK and the orphan regulator CovR of Streptococcus mutans co-regulate a group of virulence genes associated with the synthesis of and interaction with extracellular polysaccharides of the biofilm matrix. Knockout mutants of vicK and covR display abnormal cell division and morphology phenotypes, although the gene function defects involved are as yet unknown. Using transcriptomic comparisons between parent strain UA159 with vicK (UAvic) or covR (UAcov) deletion mutants together with electrophoretic motility shift assays (EMSA), we identified genes directly regulated by both VicR and CovR with putative functions in cell wall/surface biogenesis, including gbpB, wapE, smaA, SMU.2146c, and lysM. Deletion mutants of genes regulated by VicR and CovR (wapE, lysM, smaA), or regulated only by VicR (SMU.2146c) or CovR (epsC) promoted significant alterations in biofilm initiation, including increased fragility, defects in microcolony formation, and atypical cell morphology and/or chaining. Significant reductions in mureinolytic activity and/or increases in DNA release during growth were observed in knockout mutants of smaA, wapE, lysM, SMU.2146c and epsC, implying roles in cell wall biogenesis. WapE and lysM mutations also affected cell hydrophobicity and sensitivity to osmotic or oxidative stress. Finally, vicR, covR and VicRK/CovR-targets (gbpB, wapE, smaA, SMU.2146c, lysM, epsC) are up-regulated in UA159 during biofilm initiation, in a sucrose-dependent manner. These data support a model in which VicRK and CovR coordinate cell division and surface biogenesis with the extracellular synthesis of polysaccharides, a process apparently required for formation of structurally stable biofilms in the presence of sucrose.

Indexed as

Bacterial ProteinsBiofilmsGene Expression ProfilingRepressor ProteinsStreptococcus mutansSucroseBacterial ProteinsRepressor ProteinsSucroseYycF protein, Bacteria

Identifiers

PMID23554881
PMCPMC3595261
OpenAlexW2115582528

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.