Evidence map›Paper›PMID 23552890›Full record

ArticleNature2013

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus.

Hua-Xin Liao, Rebecca Lynch, Tongqing Zhou, Feng Gao, S Munir Alam, Scott D Boyd, Andrew Z Fire, Krishna M Roskin, Chaim A Schramm, Zhenhai Zhang and 35 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06205056 (Phase I, Randomized, Double-Blind, Placebo-Controlled Study to Evaluate the Safety, Tolerability, and Immunogenicity of an Ad26.Mos4.HIV and CH505 TF chTrimer), which is not on this map. Cited by 715 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
715citing papers in PubMed, 1 pooled it
50.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06205056 phase1recruitingnot on this mapstarted 2024, after this paper: background citation

Phase I, Randomized, Double-Blind, Placebo-Controlled Study to Evaluate the Safety, Tolerability, and Immunogenicity of an Ad26.Mos4.HIV and CH505 TF chTrimer (Env) Combination to Mimic Acute HIV Viral Replication Kinetics in Healthy Adults

TypeinterventionalSponsorU.S. Army Medical Research and Development CommandRan2024 to 2026Enrolled78ConditionsHuman Immunodeficiency VirusArmsAd26.Mos4.HIV in CH505 TF chTrimer + ALFQ [Arm 1a], CH505 TF chTrimer + ALFQ [Arm 1a], Placebo [Arm 1a], Ad26.Mos4.HIV in CH505 TF chTrimer +ALFQ [Arm 2a], CH505 TF chTrimer +ALFQ [Arm 2a]
3 · Its place in the literature

Who cites it

715 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,042 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
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  5. Trial
  6. Article
  7. Review
  8. Priming of Multiple HIV Neutralizing B Cell Precursors in Humans.medRxiv : the preprint server for health sciences · 2026
    Article
  9. Article
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  13. Article
  14. Review
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  17. Article
  18. Article
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655 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

45 authors at 9 institutions in 3 countries.

Hua-Xin LiaoDuke University Human Vaccine Institute, Departments of Medicine and Immunology, Duke University School of Medicine, Durham, North Carolina 27710, USA. hliao@duke.edu
Rebecca Lynch
Tongqing Zhou
Feng Gao
S Munir Alam
Scott D Boyd
Andrew Z Fire
Krishna M Roskin
Chaim A Schramm
Zhenhai Zhang
Jiang Zhu
Lawrence Shapiro
NISC Comparative Sequencing Program
James C Mullikin
S Gnanakaran
Peter Hraber
Kevin Wiehe
Garnett Kelsoe
Guang Yang
Shi-Mao Xia
David C Montefiori
Robert Parks
Krissey E Lloyd
Richard M Scearce
Kelly A Soderberg
Myron Cohen
Gift Kamanga
Mark K Louder
Lillian M Tran
Yue Chen
Fangping Cai
Sheri Chen
Stephanie Moquin
Xiulian Du
M Gordon Joyce
Sanjay Srivatsan
Baoshan Zhang
Anqi Zheng
George M Shaw
Beatrice H Hahn
Thomas B Kepler
Bette T M Korber
Peter D Kwong
John R Mascola
Barton F Haynes
National Institutes of Health · USDuke University · USLos Alamos National Laboratory · USPalo Alto University · USBoston University · USColumbia University · USUniversity of North Carolina at Chapel Hill · USUniversity of Pennsylvania · USKamuzu Central Hospital · MW

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI LETVIN, NORMAN L · 2006 to 2011
$290.5M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Neutralization Mechanisms Of Anti-HIV-1 Monoclonal AntibodiesZIAAI005022 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$24.6M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2005 to 2005
$14.9M
Determination of the Neutralization Specificity in Broadly Neutralizing HIV SeraZIAAI005089 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MASCOLA, JOHN · 2009 to 2018
$9.6M
Intramural NIH HHSNIAID NIH HHS AI067854NIAID NIH HHS AI100645NIAID NIH HHS P30 AI050410NIAID NIH HHS U01 AI067854NIAID NIH HHS U19 AI067854NIAID NIH HHS UM1 AI100645
6 · The paper itself

Abstract

Current human immunodeficiency virus-1 (HIV-1) vaccines elicit strain-specific neutralizing antibodies. However, cross-reactive neutralizing antibodies arise in approximately 20% of HIV-1-infected individuals, and details of their generation could provide a blueprint for effective vaccination. Here we report the isolation, evolution and structure of a broadly neutralizing antibody from an African donor followed from the time of infection. The mature antibody, CH103, neutralized approximately 55% of HIV-1 isolates, and its co-crystal structure with the HIV-1 envelope protein gp120 revealed a new loop-based mechanism of CD4-binding-site recognition. Virus and antibody gene sequencing revealed concomitant virus evolution and antibody maturation. Notably, the unmutated common ancestor of the CH103 lineage avidly bound the transmitted/founder HIV-1 envelope glycoprotein, and evolution of antibody neutralization breadth was preceded by extensive viral diversification in and near the CH103 epitope. These data determine the viral and antibody evolution leading to induction of a lineage of HIV-1 broadly neutralizing antibodies, and provide insights into strategies to elicit similar antibodies by vaccination.

Indexed as

Evolution, MolecularAfricaAIDS VaccinesAmino Acid SequenceAntibodies, MonoclonalAntibodies, NeutralizingCD4 AntigensCell LineageCells, CulturedClone CellsCross ReactionsCrystallography, X-RayEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120AIDS VaccinesAntibodies, MonoclonalAntibodies, NeutralizingCD4 AntigensEpitopesHIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID23552890
PMCPMC3637846
OpenAlexW1978398372

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.