Evidence map›Paper›PMID 23552862›Full record

ArticleAmerican journal of physiology. Renal physiology2013

Movement of NH₃ through the human urea transporter B: a new gas channel.

R Ryan Geyer, Raif Musa-Aziz, Giray Enkavi, P Mahinthichaichan, Emad Tajkhorshid, Walter F Boron

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Role of channels in thebioRxiv : the preprint server for biology · 2025
    Article
  4. Role of channels in the ObioRxiv : the preprint server for biology · 2025
    Article
  5. Protein Structures of Urea Transporters.Sub-cellular biochemistry · 2025
    Review
  6. Article
  7. Article
  8. Biology open · 2018
    Article
  9. Alternative channels for urea in the inner medulla of the rat kidney.American journal of physiology. Renal physiology · 2015
    Article
  10. Article
  11. Renal acid-base regulation: new insights from animal models.Pflugers Archiv : European journal of physiology · 2015
    Review
  12. Article
  13. Mathematical modeling of acid-base physiology.Progress in biophysics and molecular biology · 2015
    Review
  14. Article
  15. Article
  16. Review
  17. Structure of urea transporters.Sub-cellular biochemistry · 2014
    Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

R Ryan GeyerDepartment of Physiology and Biophysics, Case Western Reserve University, Cleveland, OH 44106, USA. rrg8@cwru.edu
Raif Musa-Aziz
Giray Enkavi
P Mahinthichaichan
Emad Tajkhorshid
Walter F Boron
University of Illinois Urbana-Champaign · USCase Western Reserve University · USUniversidade de São Paulo · BR

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2010 to 2017
$31.9M
WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Regulation of Proximal Tubule TransportR01DK081567 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI BORON, WALTER F · 2009 to 2013
$2.6M
Molecular Mechanisms of Active Transport Across Cellular MembranesR01GM086749 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2009 to 2013
$1.5M
Understanding the role of phospholipids in integrin signalingR01GM101048 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SLIGAR, STEPHEN G. · 2012 to 2015
$1.1M
NIDDK NIH HHS DK81567NIGMS NIH HHS P41 GM104601NIGMS NIH HHS P41-GM-104601NIGMS NIH HHS R01 GM086749NIGMS NIH HHS R01-GM-086749NIGMS NIH HHS R01-GM-101048NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM-087519
6 · The paper itself

Abstract

Aquaporins and Rh proteins can function as gas (CO₂ and NH₃) channels. The present study explores the urea, H₂O, CO₂, and NH₃ permeability of the human urea transporter B (UT-B) (SLC14A1), expressed in Xenopus oocytes. We monitored urea uptake using [¹⁴C]urea and measured osmotic water permeability (Pf) using video microscopy. To obtain a semiquantitative measure of gas permeability, we used microelectrodes to record the maximum transient change in surface pH (ΔpHS) caused by exposing oocytes to 5% CO₂/33 mM HCO₃⁻ (pHS increase) or 0.5 mM NH₃/NH₄⁺ (pHS decrease). UT-B expression increased oocyte permeability to urea by >20-fold, and Pf by 8-fold vs. H₂O-injected control oocytes. UT-B expression had no effect on the CO₂-induced ΔpHS but doubled the NH₃-induced ΔpHS. Phloretin reduced UT-B-dependent urea uptake (Jurea*) by 45%, Pf* by 50%, and (- ΔpHS*)NH₃ by 70%. p-Chloromercuribenzene sulfonate reduced Jurea* by 25%, Pf* by 30%, and (ΔpHS*)NH₃ by 100%. Molecular dynamics (MD) simulations of membrane-embedded models of UT-B identified the monomeric UT-B pores as the main conduction pathway for both H₂O and NH₃ and characterized the energetics associated with permeation of these species through the channel. Mutating each of two conserved threonines lining the monomeric urea pores reduced H₂O and NH₃ permeability. Our data confirm that UT-B has significant H₂O permeability and for the first time demonstrate significant NH₃ permeability. Thus the UTs become the third family of gas channels. Inhibitor and mutagenesis studies and results of MD simulations suggest that NH₃ and H₂O pass through the three monomeric urea channels in UT-B.

Indexed as

4-ChloromercuribenzenesulfonateAmino Acid SubstitutionAmmoniaAnimalsCarbon DioxideGasesHumansHydrogen-Ion ConcentrationMembrane Transport ProteinsMolecular Dynamics SimulationOocytesOsmosisPermeabilityPhloretinUreaUrea Transporters4-ChloromercuribenzenesulfonateAmmoniaCarbon DioxideGasesMembrane Transport ProteinsPhloretinUreaUrea TransportersWaterammonia transportcarbon dioxide transportmembrane proteinurea transportwater transport

Identifiers

PMID23552862
PMCPMC3680674
OpenAlexW2015160249

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.