Evidence map›Paper›PMID 23550551›Full record

ArticleNucleic acid therapeutics2013

A systematic study of the features critical for designing a high avidity multivalent aptamer.

Xiaoching Zhao, John T Lis, Hua Shi

Open access · greenAbstract read
In one paragraph

Article in Nucleic acid therapeutics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  12. Methods for Improving Aptamer Binding Affinity.Molecules (Basel, Switzerland) · 2016
    Review
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Xiaoching ZhaoDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, USA.
John T Lis
Hua Shi
Cornell University · USState University of New York · US

Funding

Use of aptamers in dissecting the HSF-regulated cancer-enabling networkR01CA140730 · NCI · CORNELL UNIVERSITY · PI LIS, JOHN T, SHI, HUA · 2009 to 2012
$1.3M
TRANSCRIPTIONALLY ACTIVE CHROMATINR01GM040918 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIS, JOHN T · 1989 to 1998
–
NCI NIH HHS CA140730NCI NIH HHS R01 CA140730NIGMS NIH HHS GM40918
6 · The paper itself

Abstract

Macromolecular interactions are central to the regulation and execution of many key biological processes, and therefore, they are attractive targets for drug discovery. Previously, we identified an RNA aptamer for the heat shock factor (HSF1), which is capable of interfering with the binding of HSF1 to its cognate DNA elements. Here we report the significant enhancement of avidity through dimerization of this aptamer. In particular, we describe the effect of 2 factors in designing a multivalent aptamer: the distance between active subunits and the flexibility of the linkage.

Indexed as

AnimalsAptamers, NucleotideBase SequenceDimerizationDNADNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsHeat-Shock ProteinsHeat Shock Transcription FactorsMolecular Sequence DataNucleic Acid ConformationProtein BindingQuantitative Structure-Activity RelationshipSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAptamers, NucleotideDNADNA-Binding ProteinsDrosophila ProteinsHeat-Shock ProteinsHeat Shock Transcription FactorsHSF1 protein, S cerevisiaeHsf protein, DrosophilaSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID23550551
PMCPMC3660072
OpenAlexW1722206855

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.