ArticleG3 (Bethesda, Md.)2013
Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex.
Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Enhancing Festuca chloroplast genome resources.Journal of plant research · 2025Article
- Phylogenomics and plastome evolution of Lithospermeae (Boraginaceae).BMC plant biology · 2024Article
- Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants.BMC genomics · 2023Article
- The complete chloroplast genome of critically endangered Chimonobambusa hirtinoda (Poaceae: Chimonobambusa) and phylogenetic analysis.Scientific reports · 2022Article
- Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes.BMC plant biology · 2020Article
- Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez ArchipelagoFrontiers in plant science · 2020Article
- Isolation of Intact Chloroplast for Sequencing Plastid Genomes of FivePlants (Basel, Switzerland) · 2019Article
- Postglacial colonization history reflects in the genetic structure of natural populations ofEcology and evolution · 2019Article
- Development of molecular markers for invasive alien plants in Korea: a case study of a toxic weed,PeerJ · 2019Article
- Towards Improved Molecular Identification Tools in Fine Fescue (Frontiers in genetics · 2019Article
- Article
- Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa).Scientific reports · 2018Article
- A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.PeerJ · 2018Article
- Molecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes.BMC genomics · 2017Article
- Article
- Chloroplast genomes: diversity, evolution, and applications in genetic engineering.Genome biology · 2016Review
- Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.AoB PLANTS · 2015Article
- Development and characterization of chloroplast microsatellite markers in a fine-leaved fescue, Festuca rubra (Poaceae).Applications in plant sciences · 2014Article
- Combined analysis of the chloroplast genome and transcriptome of the Antarctic vascular plant Deschampsia antarctica Desv.PloS one · 2014Article
- Complete Arabis alpina chloroplast genome sequence and insight into its polymorphism.Meta gene · 2013Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chloroplast genome sequences are of broad significance in plant biology, due to frequent use in molecular phylogenetics, comparative genomics, population genetics, and genetic modification studies. The present study used a second-generation sequencing approach to determine and assemble the plastid genomes (plastomes) of four representatives from the agriculturally important Lolium-Festuca species complex of pasture grasses (Lolium multiflorum, Festuca pratensis, Festuca altissima, and Festuca ovina). Total cellular DNA was extracted from either roots or leaves, was sequenced, and the output was filtered for plastome-related reads. A comparison between sources revealed fewer plastome-related reads from root-derived template but an increase in incidental bacterium-derived sequences. Plastome assembly and annotation indicated high levels of sequence identity and a conserved organization and gene content between species. However, frequent deletions within the F. ovina plastome appeared to contribute to a smaller plastid genome size. Comparative analysis with complete plastome sequences from other members of the Poaceae confirmed conservation of most grass-specific features. Detailed analysis of the rbcL-psaI intergenic region, however, revealed a "hot-spot" of variation characterized by independent deletion events. The evolutionary implications of this observation are discussed. The complete plastome sequences are anticipated to provide the basis for potential organelle-specific genetic modification of pasture grasses.
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