Evidence map›Paper›PMID 23548898›Full record

ArticleThe Journal of biological chemistry2013

Systematic analysis of γ-aminobutyric acid (GABA) metabolism and function in the social amoeba Dictyostelium discoideum.

Yuantai Wu, Chris Janetopoulos

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Global profiling of polyketide synthases in facultative multicellular eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Learning in the Single-Cell OrganismInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Transcriptional Profiling of the ProbioticInternational journal of molecular sciences · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yuantai WuDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37232, USA.
Chris Janetopoulos
Vanderbilt University · US

Funding

PI(3,4,5)P3 Regulates Cell Polarity During Chemotaxis and CytokinesisR01GM080370 · NIGMS · VANDERBILT UNIVERSITY · PI JANETOPOULOS, CHRISTOPHER J · 2008 to 2012
$1.4M
NIGMS NIH HHS GM080370NIGMS NIH HHS R01 GM080370
6 · The paper itself

Abstract

While GABA has been suggested to regulate spore encapsulation in the social amoeba Dictyostelium discoideum, the metabolic profile and other potential functions of GABA during development remain unclear. In this study, we investigated the homeostasis of GABA metabolism by disrupting genes related to GABA metabolism and signaling. Extracellular levels of GABA are tightly regulated during early development, and GABA is generated by the glutamate decarboxylase, GadB, during growth and in early development. However, overexpression of the prespore-specific homologue, GadA, in the presence of GadB reduces production of extracellular GABA. Perturbation of extracellular GABA levels delays the process of aggregation. Cytosolic GABA is degraded by the GABA transaminase, GabT, in the mitochondria. Disruption of a putative vesicular GABA transporter (vGAT) homologue DdvGAT reduces secreted GABA. We identified the GABAB receptor-like family member GrlB as the major GABA receptor during early development, and either disruption or overexpression of GrlB delays aggregation. This delay is likely the result of an abolished pre-starvation response and late expression of several "early" developmental genes. Distinct genes are employed for GABA generation during sporulation. During sporulation, GadA alone is required for generating GABA and DdvGAT is likely responsible for GABA secretion. GrlE but not GrlB is the GABA receptor during late development.

Indexed as

4-Aminobutyrate TransaminaseDictyosteliumGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidGlutamate DecarboxylaseProtozoan ProteinsReceptors, GABA4-Aminobutyrate TransaminaseGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidGlutamate DecarboxylaseProtozoan ProteinsReceptors, GABACell SignalingDevelopmentDictyosteliumGABA ReceptorsSporulation

Identifiers

PMID23548898
PMCPMC3663548
OpenAlexW2008244639

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.