Evidence map›Paper›PMID 23547841›Full record

ArticleLeukemia & lymphoma2013

Methylation of promoters of microRNAs and their host genes in myelodysplastic syndromes.

Begum Erdogan, Amma Bosompem, Dunfa Peng, Leng Han, Emily Smith, Mija E Kennedy, Catherine E Alford, Huiyun Wu, Zhongming Zhao, Claudio A Mosse and 2 more

Open access · greenAbstract read
In one paragraph

Article in Leukemia & lymphoma, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Begum ErdoganDepartment of Pathology, Immunology, and Microbiology.
Amma Bosompem
Dunfa Peng
Leng Han
Emily Smith
Mija E Kennedy
Catherine E Alford
Huiyun Wu
Zhongming Zhao
Claudio A Mosse
Wael El-Rifai
Annette S Kim
Bipar · FRVA Tennessee Valley Healthcare System · USVanderbilt University Medical Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
NCI NIH HHS 5P30 CA068485NCI NIH HHS P30 CA068485NCRR NIH HHS UL1 RR024975
6 · The paper itself

Abstract

Myelodysplastic syndromes (MDS) are a group of hematopoietic malignancies characterized by ineffective hematopoiesis. Recently, we identified MDS-associated microRNAs (miRNAs) that are down-regulated in MDS. This study examines possible explanations for that observed down-regulation of miRNA expression in MDS. Since genomic losses are insufficient to explain the down-regulation of all our MDS-associated miRNAs, we explored other avenues. We demonstrate that these miRNAs are predominantly intragenic, and that, in many cases, they and their host genes are expressed in a similar pattern during myeloid maturation, suggesting their co-regulation. This co-regulation is further supported by the down-regulation of several of the host genes in MDS and increased methylation of the shared promoters of several miRNAs and their respective host genes. These studies identify a role of hypermethylation of miRNA promoters in the down-regulation of MDS-associated miRNAs, unifying research on miRNAs in MDS and epigenetic regulation in MDS into a common pathway.

Indexed as

DNA MethylationGene Expression RegulationPromoter Regions, GeneticCell DifferentiationCell Line, TumorChromosome DeletionChromosome MappingCpG IslandsHumansMicroRNAsMyelodysplastic SyndromesTranscriptomeTretinoinMicroRNAsTretinoin

Identifiers

PMID23547841
PMCPMC4120331
OpenAlexW2120125276

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.