Evidence map›Paper›PMID 23546690›Full record

ArticleHuman genetics2013

Sex- and age-dependent DNA methylation at the 17q12-q21 locus associated with childhood asthma.

Anna K Naumova, Abeer Al Tuwaijri, Andréanne Morin, Vanessa T Vaillancourt, Vanessa T Vaillancout, Anne-Marie Madore, Soizik Berlivet, Hamid-Reza Kohan-Ghadr, Sanny Moussette, Catherine Laprise

Erratum issuedAbstract readCase ReportsMulticenter Study
PubMed Publisher
In one paragraph

Article in Human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  6. Expression levels ofHeliyon · 2024
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  12. Article
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  16. Epigenome-wide association study of asthma and wheeze characterizes loci withinAllergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
    Vaillancout, Vanessa T [corrected to Vaillancourt, Vanessa T]
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Anna K NaumovaDepartment of Obstetrics and Gynecology, McGill University, Montreal, QC, H3A 1A1, Canada. anna.naoumova@mcgill.ca
Abeer Al Tuwaijri
Andréanne Morin
Vanessa T Vaillancourt
Vanessa T Vaillancout
Anne-Marie Madore
Soizik Berlivet
Hamid-Reza Kohan-Ghadr
Sanny Moussette
Catherine Laprise
Université du Québec à Chicoutimi · CAMcGill University · CAMcGill University Health Centre · CA

Funding

CIHR 115117-1
6 · The paper itself

Abstract

Chromosomal region 17q12-q21 is one of the best-replicated genome-wide association study (GWAS) hits and associated with childhood-onset asthma. However, the mechanism by which the genetic association is restricted to childhood-onset disease is unclear. During childhood, more boys than girls develop asthma. Therefore, we tested the hypothesis that the 17q12-q21 genetic association was sex-specific. Indeed, a TDT test showed that in the Saguenay-Lac-Saint-Jean familial collection, the 17q12-q21 association was significant among male, but not among female asthmatic subjects. We next hypothesized that the bias in the genetic association resulted from sex-specific and/or age-dependent DNA methylation at regulatory regions and determined the methylation profiles of five 17q12-q21 gene promoters using the bisulfite sequencing methylation assay. We identified a single regulatory region within the zona pellucida binding protein 2 (ZPBP2) gene, which showed statistically significant differences between males and females with respect to DNA methylation. DNA methylation also varied with age and was higher in adult males compared to boys. We have recently identified two functionally important polymorphisms, both within the ZPBP2 gene that influence expression levels of neighboring genes. Combined with the results of the present work, these data converge pointing to the same 5 kb region within the ZPBP2 gene as a critical region for both gene expression regulation and predisposition to asthma. Our data show that sex- and age-dependent DNA methylation may act as a modifier of genetic effects and influence the results of genetic association studies.

Indexed as

AgingGenetic LociSex CharacteristicsAdolescentAdultAgedAged, 80 and overAsthmaChildChild, PreschoolChromosomes, Human, Pair 17DNA MethylationEgg ProteinsFemaleFollow-Up StudiesGene Expression RegulationEgg ProteinsMembrane ProteinsZPBP2 protein, human

Identifiers

PMID23546690
OpenAlexW1968953959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.