Evidence map›Paper›PMID 23545644›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2013

Deer mouse hemoglobin exhibits a lowered oxygen affinity owing to mobility of the E helix.

Noriko Inoguchi, Jake R Oshlo, Chandrasekhar Natarajan, Roy E Weber, Angela Fago, Jay F Storz, Hideaki Moriyama

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Crystal structure of hemoglobin from mouse (Mus musculus) compared with those from other small animals and humans.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  2. Article
  3. Bohr effect and temperature sensitivity of hemoglobins from highland and lowland deer mice.Comparative biochemistry and physiology. Part A, Molecular & integrative physiology · 2016
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Noriko InoguchiSchool of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Jake R Oshlo
Chandrasekhar Natarajan
Roy E Weber
Angela Fago
Jay F Storz
Hideaki Moriyama
University of Nebraska–Lincoln · USAarhus University · DKNebraska Wesleyan University · US

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
NHLBI NIH HHS HL087216-S1NHLBI NIH HHS R01 HL087216
6 · The paper itself

Abstract

The deer mouse, Peromyscus maniculatus, exhibits altitude-associated variation in hemoglobin oxygen affinity. To examine the structural basis of this functional variation, the structure of the hemoglobin was solved. Recombinant hemoglobin was expressed in Escherichia coli and was purified by ion-exchange chromatography. Recombinant hemoglobin was crystallized by the hanging-drop vapor-diffusion method using polyethylene glycol as a precipitant. The obtained orthorhombic crystal contained two subunits in the asymmetric unit. The refined structure was interpreted as the aquo-met form. Structural comparisons were performed among hemoglobins from deer mouse, house mouse and human. In contrast to human hemoglobin, deer mouse hemoglobin lacks the hydrogen bond between α1Trp14 in the A helix and α1Thr67 in the E helix owing to the Thr67Ala substitution. In addition, deer mouse hemoglobin has a unique hydrogen bond at the α1β1 interface between residues α1Cys34 and β1Ser128.

Indexed as

PeromyscusAmino Acid SequenceAnimalsHemoglobinsHumansMiceModels, MolecularMolecular Sequence DataOxygenProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiarySequence AlignmentStructural Homology, ProteinHemoglobinsOxygendeer mousehemoglobinoxygen affinityPeromyscus maniculatus

Identifiers

PMID23545644
PMCPMC3614163
OpenAlexW2039255875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.