Evidence map›Paper›PMID 23545495›Full record

ArticleCell reports2013

A proteomic characterization of factors enriched at nascent DNA molecules.

Andres J Lopez-Contreras, Isabel Ruppen, Maria Nieto-Soler, Matilde Murga, Sara Rodriguez-Acebes, Silvia Remeseiro, Sara Rodrigo-Perez, Ana M Rojas, Juan Mendez, Javier Muñoz and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  5. Article
  6. POLD3 as Controller of Replicative DNA Repair.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. USP7 and VCPCell reports · 2021
    Article
  18. Review
  19. Fused in sarcoma regulates DNA replication timing and kinetics.The Journal of biological chemistry · 2021
    Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Andres J Lopez-ContrerasGenomic Instability Group, Spanish National Cancer Research Centre, Madrid 28029, Spain.
Isabel Ruppen
Maria Nieto-Soler
Matilde Murga
Sara Rodriguez-Acebes
Silvia Remeseiro
Sara Rodrigo-Perez
Ana M Rojas
Juan Mendez
Javier Muñoz
Oscar Fernandez-Capetillo
Spanish National Cancer Research Centre · ESBarcelona Supercomputing Center · ES

Funding

European Research Council 210520Howard Hughes Medical InstituteWorldwide Cancer Research 12-0229
6 · The paper itself

Abstract

DNA replication is facilitated by multiple factors that concentrate in the vicinity of replication forks. Here, we developed an approach that combines the isolation of proteins on nascent DNA chains with mass spectrometry (iPOND-MS), allowing a comprehensive proteomic characterization of the human replisome and replisome-associated factors. In addition to known replisome components, we provide a broad list of proteins that reside in the vicinity of the replisome, some of which were not previously associated with replication. For instance, our data support a link between DNA replication and the Williams-Beuren syndrome and identify ZNF24 as a replication factor. In addition, we reveal that SUMOylation is widespread for factors that concentrate near replisomes, which contrasts with lower UQylation levels at these sites. This resource provides a panoramic view of the proteins that concentrate in the surroundings of the replisome, which should facilitate future investigations on DNA replication and genome maintenance.

Indexed as

ProteomicsCell LineDNADNA ReplicationGene Regulatory NetworksHEK293 CellsHumansKruppel-Like Transcription FactorsMass SpectrometrySmall Ubiquitin-Related Modifier ProteinsUbiquitinationWilliams SyndromeDNAKruppel-Like Transcription FactorsSmall Ubiquitin-Related Modifier ProteinsZNF24 protein, human

Identifiers

PMID23545495
PMCPMC3714744
OpenAlexW2143404968

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.