Evidence map›Paper›PMID 23545328›Full record

ArticleDevelopmental biology2013

Following the 'tracks': Tramtrack69 regulates epithelial tube expansion in the Drosophila ovary through Paxillin, Dynamin, and the homeobox protein Mirror.

Nathaniel C Peters, Nathaniel H Thayer, Scott A Kerr, Martin Tompa, Celeste A Berg

Abstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Reduction in Gonad Development and Sperm Motility in Male Brown PlanthopperInternational journal of molecular sciences · 2025
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  4. Finishing the egg.Genetics · 2024
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  8. Article
  9. Downregulation of homeodomain protein Cut is essential forDevelopment (Cambridge, England) · 2019
    Article
  10. Review
  11. Complex structures from patterned cell sheets.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Methods for studying oogenesis.Methods (San Diego, Calif.) · 2014
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nathaniel C PetersUniversity of Washington, Molecular and Cellular Biology Program and Department of Genome Sciences, Box 355065, Seattle, WA 98195-5065, USA.
Nathaniel H Thayer
Scott A Kerr
Martin Tompa
Celeste A Berg
University of Washington · US

Funding

Regulation of tubulogenesis in the Drosophila ovaryR01GM079433 · NIGMS · UNIVERSITY OF WASHINGTON · PI BERG, CELESTE A. · 2009 to 2023
$4.2M
NIGMS NIH HHS R01 GM079433NIGMS NIH HHS R01-GM079433
6 · The paper itself

Abstract

Epithelial tubes are the infrastructure for organs and tissues, and tube morphogenesis requires precise orchestration of cell signaling, shape, migration, and adhesion. Follicle cells in the Drosophila ovary form a pair of epithelial tubes whose lumens act as molds for the eggshell respiratory filaments, or dorsal appendages (DAs). DA formation is a robust and accessible model for studying the patterning, formation, and expansion of epithelial tubes. Tramtrack69 (TTK69), a transcription factor that exhibits a variable embryonic DNA-binding preference, controls DA lumen volume and shape by promoting tube expansion; the tramtrack mutation twin peaks (ttk(twk)) reduces TTK69 levels late in oogenesis, inhibiting this expansion. Microarray analysis of wild-type and ttk(twk) ovaries, followed by in situ hybridization and RNAi of candidate genes, identified the Phospholipase B-like protein Lamina ancestor (LAMA), the scaffold protein Paxillin, the endocytotic regulator Shibire (Dynamin), and the homeodomain transcription factor Mirror, as TTK69 effectors of DA-tube expansion. These genes displayed enriched expression in DA-tube cells, except lama, which was expressed in all follicle cells. All four genes showed reduced expression in ttk(twk) mutants and exhibited RNAi phenotypes that were enhanced in a ttk(twk)/+ background, indicating ttk(twk) genetic interactions. Although previous studies show that Mirror patterns the follicular epithelium prior to DA tubulogenesis, we show that Mirror has an independent, novel role in tube expansion, involving positive regulation of Paxillin. Thus, characterization of ttk(twk)-differentially expressed genes expands the network of TTK69 effectors, identifies novel epithelial tube-expansion regulators, and significantly advances our understanding of this vital developmental process.

Indexed as

AnimalsDrosophila melanogasterDrosophila ProteinsDynaminsEpitheliumEye ProteinsFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksHomeodomain ProteinsImmunohistochemistryIn Situ Hybridization, FluorescenceMaleModels, GeneticMutationDrosophila ProteinsDynaminsEye ProteinsHomeodomain Proteinslama protein, Drosophilamirr protein, DrosophilaNerve Tissue ProteinsPaxillinPax protein, DrosophilaRepressor Proteinsshi protein, DrosophilaTranscription Factorsttk protein, Drosophila

Identifiers

PMID23545328
PMCPMC4141043
OpenAlexW2093287744

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.