Evidence map›Paper›PMID 23544013›Full record

ArticlePLoS genetics2013

Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.

Fergus J Couch, Xianshu Wang, Lesley McGuffog, Andrew Lee, Curtis Olswold, Karoline B Kuchenbaecker, Penny Soucy, Zachary Fredericksen, Daniel Barrowdale, Joe Dennis and 260 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed, 8 pooled it
35.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 8 syntheses or guidelines pooled it, 390 citations in OpenAlex.

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  7. Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2015
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  17. An Investigation of theMedical sciences (Basel, Switzerland) · 2025
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104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

270 authors at 20 institutions in 26 countries.

Fergus J CouchDepartment of Laboratory Medicine and Pathology, and Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.
Xianshu Wang
Lesley McGuffog
Andrew Lee
Curtis Olswold
Karoline B Kuchenbaecker
Penny Soucy
Zachary Fredericksen
Daniel Barrowdale
Joe Dennis
Mia M Gaudet
Ed Dicks
Matthew Kosel
Sue Healey
Olga M Sinilnikova
Adam Lee
François Bacot
Daniel Vincent
Frans B L Hogervorst
Susan Peock
Dominique Stoppa-Lyonnet
Anna Jakubowska
kConFab Investigators
Paolo Radice
Rita Katharina Schmutzler
SWE-BRCA
Susan M Domchek
Marion Piedmonte
Christian F Singer
Eitan Friedman
Mads Thomassen
Ontario Cancer Genetics Network
Thomas V O Hansen
Susan L Neuhausen
Csilla I Szabo
Ignacio Blanco
Mark H Greene
Beth Y Karlan
Judy Garber
Catherine M Phelan
Jeffrey N Weitzel
Marco Montagna
Edith Olah
Irene L Andrulis
Andrew K Godwin
Drakoulis Yannoukakos
David E Goldgar
Trinidad Caldes
Heli Nevanlinna
Ana Osorio
Mary Beth Terry
Mary B Daly
Elizabeth J van Rensburg
Ute Hamann
Susan J Ramus
Amanda Ewart Toland
Maria A Caligo
Olufunmilayo I Olopade
Nadine Tung
Kathleen Claes
Mary S Beattie
Melissa C Southey
Evgeny N Imyanitov
Marc Tischkowitz
Ramunas Janavicius
Esther M John
Ava Kwong
Orland Diez
Judith Balmaña
Rosa B Barkardottir
Banu K Arun
Gad Rennert
Soo-Hwang Teo
Patricia A Ganz
Ian Campbell
Annemarie H van der Hout
Carolien H M van Deurzen
Caroline Seynaeve
Encarna B Gómez Garcia
Flora E van Leeuwen
Hanne E J Meijers-Heijboer
Johannes J P Gille
Margreet G E M Ausems
Marinus J Blok
Marjolijn J L Ligtenberg
Matti A Rookus
Peter Devilee
Senno Verhoef
Theo A M van Os
Juul T Wijnen
HEBON
EMBRACE
Debra Frost
Steve Ellis
Elena Fineberg
Radka Platte
D Gareth Evans
Louise Izatt
Rosalind A Eeles
Julian Adlard
Diana M Eccles
Jackie Cook
Carole Brewer
Fiona Douglas
Shirley Hodgson
Patrick J Morrison
Lucy E Side
Alan Donaldson
Catherine Houghton
Mark T Rogers
Huw Dorkins
Jacqueline Eason
Helen Gregory
Emma McCann
Alex Murray
Alain Calender
Agnès Hardouin
Pascaline Berthet
Capucine Delnatte
Catherine Nogues
Christine Lasset
Claude Houdayer
Dominique Leroux
Etienne Rouleau
Fabienne Prieur
Francesca Damiola
Hagay Sobol
Isabelle Coupier
Laurence Venat-Bouvet
Laurent Castera
Marion Gauthier-Villars
Mélanie Léoné
Pascal Pujol
Sylvie Mazoyer
Yves-Jean Bignon
GEMO Study Collaborators
Elżbieta Złowocka-Perłowska
Jacek Gronwald
Jan Lubinski
Katarzyna Durda
Katarzyna Jaworska
Tomasz Huzarski
Amanda B Spurdle
Alessandra Viel
Bernard Peissel
Bernardo Bonanni
Giulia Melloni
Laura Ottini
Laura Papi
Liliana Varesco
Maria Grazia Tibiletti
Paolo Peterlongo
Sara Volorio
Siranoush Manoukian
Valeria Pensotti
Norbert Arnold
Christoph Engel
Helmut Deissler
Dorothea Gadzicki
Andrea Gehrig
Karin Kast
Kerstin Rhiem
Alfons Meindl
Dieter Niederacher
Nina Ditsch
Hansjoerg Plendl
Sabine Preisler-Adams
Stefanie Engert
Christian Sutter
Raymonda Varon-Mateeva
Barbara Wappenschmidt
Bernhard H F Weber
Brita Arver
Marie Stenmark-Askmalm
Niklas Loman
Richard Rosenquist
Zakaria Einbeigi
Katherine L Nathanson
Timothy R Rebbeck
Stephanie V Blank
David E Cohn
Gustavo C Rodriguez
Laurie Small
Michael Friedlander
Victoria L Bae-Jump
Anneliese Fink-Retter
Christine Rappaport
Daphne Gschwantler-Kaulich
Georg Pfeiler
Muy-Kheng Tea
Noralane M Lindor
Bella Kaufman
Shani Shimon Paluch
Yael Laitman
Anne-Bine Skytte
Anne-Marie Gerdes
Inge Sokilde Pedersen
Sanne Traasdahl Moeller
Torben A Kruse
Uffe Birk Jensen
Joseph Vijai
Kara Sarrel
Mark Robson
Noah Kauff
Anna Marie Mulligan
Gord Glendon
Hilmi Ozcelik
Bent Ejlertsen
Finn C Nielsen
Lars Jønson
Mette K Andersen
Yuan Chun Ding
Linda Steele
Lenka Foretova
Alex Teulé
Conxi Lazaro
Joan Brunet
Miquel Angel Pujana
Phuong L Mai
Jennifer T Loud
Christine Walsh
Jenny Lester
Sandra Orsulic
Steven A Narod
Josef Herzog
Sharon R Sand
Silvia Tognazzo
Simona Agata
Tibor Vaszko
Joellen Weaver
Alexandra V Stavropoulou
Saundra S Buys
Atocha Romero
Miguel de la Hoya
Kristiina Aittomäki
Taru A Muranen
Mercedes Duran
Wendy K Chung
Adriana Lasa
Cecilia M Dorfling
Alexander Miron
BCFR
Javier Benitez
Leigha Senter
Dezheng Huo
Salina B Chan
Anna P Sokolenko
Jocelyne Chiquette
Laima Tihomirova
Tara M Friebel
Bjarni A Agnarsson
Karen H Lu
Flavio Lejbkowicz
Paul A James
Per Hall
Alison M Dunning
Daniel Tessier
Julie Cunningham
Susan L Slager
Chen Wang
Steven Hart
Kristen Stevens
Jacques Simard
Tomi Pastinen
Vernon S Pankratz
Kenneth Offit
Douglas F Easton
Georgia Chenevix-Trench
Antonis C Antoniou
CIMBA
University of Cambridge · GBDélégation Paris 5 · FRMayo Clinic · USMayo Clinic in Florida · USSheba Medical Center · ILCity of Hope · USCopenhagen University Hospital · DKInserm · FRPeter MacCallum Cancer Centre · AUMount Sinai Hospital · CAPomeranian Medical University · PLQIMR Berghofer Medical Research Institute · AUUniversité Claude Bernard Lyon 1 · FRCedars-Sinai Medical Center · USInstitut Curie · FRLund University · SEThe Netherlands Cancer Institute · NLCancer Prevention Institute of California · USCentre hospitalier universitaire de Québec · CAFondazione IRCCS Istituto Nazionale dei Tumori · IT

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
GYNECOLOGIC ONCOLOGY GROUP HEADQUARTERSU10CA027469 · NCI · GYNECOLOGIC ONCOLOGY GROUP · PI DISAIA, PHILIP J. · 1985 to 2013
$132.6M
Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
GYNECOLOGIC ONCOLOGY GROUP STATISTICAL OFFICEU10CA037517 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI BLESSING, JOHN A · 1985 to 2013
$67.4M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
GYNECOLOGIC ONCOLOGY GROUPU10CA101165 · NCI · GYNECOLOGIC ONCOLOGY GROUP · PI DISAIA, PHILIP J. · 2003 to 2014
$43.1M
Northern California Cooperative Family Registry for Breast CancerU01CA069417 · NCI · NORTHERN CALIFORNIA CANCER CENTER · PI JOHN, ESTHER M. · 1995 to 2010
$22.4M
UNIVERSITY OF UTAH CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE-UL1: BPCAUL1RR025764 · NCRR · UNIVERSITY OF UTAH · PI MCCLAIN, DONALD A. · 2008 to 2011
$19.4M
METROPOLITAN NEW YORK REGISTRY OF BREAST CANCER FAMILIESU01CA069398 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI TERRY, MARY BETH · 1995 to 2010
$10.5M
ONTARIO REGISTRY FOR STUDIES OF FAMILIAL BREAST CANCERU01CA069467 · NCI · CANCER CARE ONTARIO · PI ANDRULIS, IRENE L. · 1995 to 2010
$10.4M
Cancer Research UK 10118Cancer Research UK 11022Cancer Research UK 11174Cancer Research UK 15007Cancer Research UK 16565Cancer Research UK C12292/A11174Cancer Research UK C1287/A10118Cancer Research UK C1287/A11990Cancer Research UK C5047/A8385CCR NIH HHS RC4A153828Intramural NIH HHSNCI NIH HHS 5U01CA113916NCI NIH HHS CA-06-503NCI NIH HHS CA 101165NCI NIH HHS CA116201NCI NIH HHS CA128978NCI NIH HHS CA 27469NCI NIH HHS CA 37517NCI NIH HHS N02 CP011019NCI NIH HHS N02 CP065504NCI NIH HHS N02-CP-11019-50NCI NIH HHS N02-CP-65504NCI NIH HHS P01 CA16094NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA013696NCI NIH HHS P30 CA022435NCI NIH HHS P30 CA033752NCI NIH HHS P30 CA042014NCI NIH HHS P30 CA13696NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA074415NCI NIH HHS R01 CA083855NCI NIH HHS R01-CA083855NCI NIH HHS R01 CA102776NCI NIH HHS R01-CA102776NCI NIH HHS R01 CA128978NCI NIH HHS R01 CA140323NCI NIH HHS R01CA140323NCI NIH HHS R01 CA149429NCI NIH HHS R01 CA22435NCI NIH HHS R01CA74415NCI NIH HHS R25 CA092049NCI NIH HHS RC4 CA153828NCI NIH HHS U01 CA069398NCI NIH HHS U01 CA069417NCI NIH HHS U01 CA069446NCI NIH HHS U01 CA069467NCI NIH HHS U01 CA069631NCI NIH HHS U01 CA069638NCI NIH HHS U01 CA113916NCI NIH HHS U01 CA69398NCI NIH HHS U01 CA69417NCI NIH HHS U01 CA69446NCI NIH HHS U01 CA69467NCI NIH HHS U01 CA69631NCI NIH HHS U01 CA69638NCI NIH HHS U10 CA027469NCI NIH HHS U10 CA037517NCI NIH HHS U10 CA101165NCRR NIH HHS UL1 RR025764NIEHS NIH HHS P30 ES009089
6 · The paper itself

Abstract

BRCA1-associated breast and ovarian cancer risks can be modified by common genetic variants. To identify further cancer risk-modifying loci, we performed a multi-stage GWAS of 11,705 BRCA1 carriers (of whom 5,920 were diagnosed with breast and 1,839 were diagnosed with ovarian cancer), with a further replication in an additional sample of 2,646 BRCA1 carriers. We identified a novel breast cancer risk modifier locus at 1q32 for BRCA1 carriers (rs2290854, P = 2.7 × 10(-8), HR = 1.14, 95% CI: 1.09-1.20). In addition, we identified two novel ovarian cancer risk modifier loci: 17q21.31 (rs17631303, P = 1.4 × 10(-8), HR = 1.27, 95% CI: 1.17-1.38) and 4q32.3 (rs4691139, P = 3.4 × 10(-8), HR = 1.20, 95% CI: 1.17-1.38). The 4q32.3 locus was not associated with ovarian cancer risk in the general population or BRCA2 carriers, suggesting a BRCA1-specific association. The 17q21.31 locus was also associated with ovarian cancer risk in 8,211 BRCA2 carriers (P = 2×10(-4)). These loci may lead to an improved understanding of the etiology of breast and ovarian tumors in BRCA1 carriers. Based on the joint distribution of the known BRCA1 breast cancer risk-modifying loci, we estimated that the breast cancer lifetime risks for the 5% of BRCA1 carriers at lowest risk are 28%-50% compared to 81%-100% for the 5% at highest risk. Similarly, based on the known ovarian cancer risk-modifying loci, the 5% of BRCA1 carriers at lowest risk have an estimated lifetime risk of developing ovarian cancer of 28% or lower, whereas the 5% at highest risk will have a risk of 63% or higher. Such differences in risk may have important implications for risk prediction and clinical management for BRCA1 carriers.

Indexed as

Genome-Wide Association StudyBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsFemaleGenetic Predisposition to DiseaseGenotypeHeterozygoteHumansMiddle AgedMutationOvarian NeoplasmsPolymorphism, Single NucleotidePrognosisRisk FactorsBRCA1 ProteinBRCA1 protein, humanBRCA2 Protein

Identifiers

PMID23544013
PMCPMC3609646
OpenAlexW2158740417

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.