Evidence map›Paper›PMID 23543747›Full record

ArticleThe Journal of biological chemistry2013

Translesion synthesis past acrolein-derived DNA adducts by human mitochondrial DNA polymerase γ.

Rajesh Kasiviswanathan, Irina G Minko, R Stephen Lloyd, William C Copeland

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Synergistic Effects of theThe Journal of biological chemistry · 2017
    Article
  8. Article
  9. Mitochondrial DNA damage induced autophagy, cell death, and disease.Frontiers in bioscience (Landmark edition) · 2016
    Review
  10. Analysis of Translesion DNA Synthesis by the Mitochondrial DNA Polymerase γ.Methods in molecular biology (Clifton, N.J.) · 2016
    Article
  11. Review
  12. Molecular mechanisms of acrolein toxicity: relevance to human disease.Toxicological sciences : an official journal of the Society of Toxicology · 2015
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Rajesh KasiviswanathanMitochondrial DNA Replication Group, Laboratory of Molecular Genetics, NIEHS, National Institutes of Health, Research Triangle Park, North Carolina 27709.
Irina G MinkoCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon 97239.
R Stephen LloydCenter for Research on Occupational and Environmental Toxicology, Oregon Health and Science University, Portland, Oregon 97239; Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, Oregon 97239.
William C CopelandMitochondrial DNA Replication Group, Laboratory of Molecular Genetics, NIEHS, National Institutes of Health, Research Triangle Park, North Carolina 27709. Electronic address: copelan1@niehs.nih.gov.
Oregon Health & Science University · USNational Institute of Environmental Health Sciences · USNational Institutes of Health · US

Funding

Molecular Characterization Of The Mitochondrial Dna PolymeraseZIAES065078 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI COPELAND, WILLIAM · 2009 to 2025
$25.4M
Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
SYNTHETIC APPROACHES TO PAH-ADDUCTED NUCLEOTIDESP01ES005355 · NIEHS · VANDERBILT UNIVERSITY · PI LLOYD, STEPHEN CARROLL · 1991 to 2010
$13.4M
Cellular Responses to DNA-Protein CrosslinksR01CA106858 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN, MCCULLOUGH, AMANDA K · 2004 to 2016
$3.2M
Molecular Study Of The Mitochondrial DNA PolymeraseZ01ES065078 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI COPELAND, WILLIAM · 1994 to 2008
$2.8M
Mitochondrial DNA Polymerase With Anti-HIV NucleotidesZ01ES065080 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI COPELAND, WILLIAM · 1995 to 2008
$763k
Inhibitors of DNA polymerase kappaR03MH094179 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN · 2011 to 2012
$77k
Intramural NIH HHS Z01 ES065078Intramural NIH HHS Z01 ES065080NCI NIH HHS CA106858NCI NIH HHS P01 CA160032NCI NIH HHS R01 CA106858NIEHS NIH HHS ES05355NIEHS NIH HHS ES065078NIEHS NIH HHS P01 ES005355NIMH NIH HHS R03 MH 094179NIMH NIH HHS R03 MH094179
6 · The paper itself

Abstract

Acrolein, a mutagenic aldehyde, is produced endogenously by lipid peroxidation and exogenously by combustion of organic materials, including tobacco products. Acrolein reacts with DNA bases forming exocyclic DNA adducts, such as γ-hydroxy-1,N(2)-propano-2'-deoxyguanosine (γ-HOPdG) and γ-hydroxy-1,N(6)-propano-2'-deoxyadenosine (γ-HOPdA). The bulky γ-HOPdG adduct blocks DNA synthesis by replicative polymerases but can be bypassed by translesion synthesis polymerases in the nucleus. Although acrolein-induced adducts are likely to be formed and persist in mitochondrial DNA, animal cell mitochondria lack specialized translesion DNA synthesis polymerases to tolerate these lesions. Thus, it is important to understand how pol γ, the sole mitochondrial DNA polymerase in human cells, acts on acrolein-adducted DNA. To address this question, we investigated the ability of pol γ to bypass the minor groove γ-HOPdG and major groove γ-HOPdA adducts using single nucleotide incorporation and primer extension analyses. The efficiency of pol γ-catalyzed bypass of γ-HOPdG was low, and surprisingly, pol γ preferred to incorporate purine nucleotides opposite the adduct. Pol γ also exhibited ∼2-fold lower rates of excision of the misincorporated purine nucleotides opposite γ-HOPdG compared with the corresponding nucleotides opposite dG. Extension of primers from the termini opposite γ-HOPdG was accomplished only following error-prone purine nucleotide incorporation. However, pol γ preferentially incorporated dT opposite the γ-HOPdA adduct and efficiently extended primers from the correctly paired terminus, indicating that γ-HOPdA is probably nonmutagenic. In summary, our data suggest that acrolein-induced exocyclic DNA lesions can be bypassed by mitochondrial DNA polymerase but, in the case of the minor groove γ-HOPdG adduct, at the cost of unprecedented high mutation rates.

Indexed as

DNA AdductsAcroleinCatalytic DomainDeoxyguanosineDNA DamageDNA-Directed DNA PolymeraseDNA Polymerase gammaDNA ReplicationHumansLipid PeroxidationMitochondriaModels, ChemicalMutagenesisOligonucleotidesOxidative StressAcroleinDeoxyguanosineDNA AdductsDNA-Directed DNA PolymeraseDNA Polymerase gammaOligonucleotidesAcroleinDNA DamageDNA PolymeraseDNA ReplicationMitochondrial DNAOxidative StressTranslesion DNA Synthesis

Identifiers

PMID23543747
PMCPMC3656281
OpenAlexW2126353681

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.