Evidence map›Paper›PMID 23543739›Full record

ArticleThe Journal of biological chemistry2013

Physical and functional interactions of a monothiol glutaredoxin and an iron sulfur cluster carrier protein with the sulfur-donating radical S-adenosyl-L-methionine enzyme MiaB.

Sylvain Boutigny, Avneesh Saini, Edward E K Baidoo, Natasha Yeung, Jay D Keasling, Gareth Butland

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Essentiality of theInternational journal of molecular sciences · 2023
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  7. First Step in Catalysis of the RadicalJournal of the American Chemical Society · 2020
    Article
  8. Article
  9. Article
  10. Article
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  13. Article
  14. Article
  15. Article
  16. Review
  17. How Is Fe-S Cluster Formation Regulated?Annual review of microbiology · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sylvain BoutignyLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Avneesh SainiLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Edward E K BaidooPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720; Joint BioEnergy Institute, Emeryville, California 94608.
Natasha YeungLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Jay D KeaslingPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720; Joint BioEnergy Institute, Emeryville, California 94608; Department of Chemical Engineering, University of California, Berkeley, California 94720; Department of Bioengineering, University of California, Berkeley, California 94720.
Gareth ButlandLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720. Electronic address: gpbutland@lbl.gov.
Lawrence Berkeley National Laboratory · USJoint BioEnergy Institute · US

Funding

Novel components of iron sulfur cluster biosynthesis pathwaysR01GM088196 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BUTLAND, GARETH P · 2010 to 2014
$1.7M
NIGMS NIH HHS GM088196NIGMS NIH HHS R01 GM088196
6 · The paper itself

Abstract

The biosynthesis of iron sulfur (FeS) clusters, their trafficking from initial assembly on scaffold proteins via carrier proteins to final incorporation into FeS apoproteins, is a highly coordinated process enabled by multiprotein systems encoded in iscRSUAhscBAfdx and sufABCDSE operons in Escherichia coli. Although these systems are believed to encode all factors required for initial cluster assembly and transfer to FeS carrier proteins, accessory factors such as monothiol glutaredoxin, GrxD, and the FeS carrier protein NfuA are located outside of these defined systems. These factors have been suggested to function both as shuttle proteins acting to transfer clusters between scaffold and carrier proteins and in the final stages of FeS protein assembly by transferring clusters to client FeS apoproteins. Here we implicate both of these factors in client protein interactions. We demonstrate specific interactions between GrxD, NfuA, and the methylthiolase MiaB, a radical S-adenosyl-L-methionine-dependent enzyme involved in the maturation of a subset of tRNAs. We show that GrxD and NfuA physically interact with MiaB with affinities compatible with an in vivo function. We furthermore demonstrate that NfuA is able to transfer its cluster in vitro to MiaB, whereas GrxD is unable to do so. The relevance of these interactions was demonstrated by linking the activity of MiaB with GrxD and NfuA in vivo. We observe a severe defect in in vivo MiaB activity in cells lacking both GrxD and NfuA, suggesting that these proteins could play complementary roles in maturation and repair of MiaB.

Indexed as

CatalysisCircular DichroismEscherichia coliEscherichia coli ProteinsFree RadicalsGlutaredoxinsIron-Sulfur ProteinsMutationProtein Interaction MappingRecombinant ProteinsRNA, TransferS-AdenosylmethionineSulfurtransferasesSurface Plasmon ResonanceEscherichia coli ProteinsFree RadicalsGlutaredoxinsGrxD protein, E coliIron-Sulfur ProteinsMiaB protein, E coliNfuA protein, E coliRecombinant ProteinsRNA, TransferS-AdenosylmethionineSulfurtransferasesCarrier ProteinEscherichia coliGene KnockoutIron Sulfur Cluster BiosynthesisIron-Sulfur ProteinMonothiol GlutaredoxinProtein-Protein InteractionsRadical SAM EnzymeRecombinant Protein ExpressionS-Adenosylmethionine (SAM)

Identifiers

PMID23543739
PMCPMC3656276
OpenAlexW2014614987

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.