Evidence map›Paper›PMID 23543715›Full record

ArticleJournal of bacteriology2013

Multiple roles of RNase Y in Streptococcus pyogenes mRNA processing and degradation.

Zhiyun Chen, Andreas Itzek, Horst Malke, Joseph J Ferretti, Jens Kreth

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Membrane Localization of RNase Y Is Important for Global Gene Expression inInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Bacterial ribonucleases and their roles in RNA metabolism.Critical reviews in biochemistry and molecular biology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zhiyun ChenDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA. Zhiyun-Chen@ouhsc.edu
Andreas Itzek
Horst Malke
Joseph J Ferretti
Jens Kreth
University of Oklahoma Health Sciences Center · US

Funding

Interspecies Streptococcal Antagonisms in Oral BiofilmsR00DE018400 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI KRETH, JENS · 2009 to 2011
$732k
NIDCR NIH HHS R00 DE018400NIDCR NIH HHS R00DE018400
6 · The paper itself

Abstract

Control over mRNA stability is an essential part of gene regulation that involves both endo- and exoribonucleases. RNase Y is a recently identified endoribonuclease in Gram-positive bacteria, and an RNase Y ortholog has been identified in Streptococcus pyogenes (group A streptococcus [GAS]). In this study, we used microarray and Northern blot analyses to determine the S. pyogenes mRNA half-life of the transcriptome and to understand the role of RNase Y in global mRNA degradation and processing. We demonstrated that S. pyogenes has an unusually high mRNA turnover rate, with median and mean half-lives of 0.88 min and 1.26 min, respectively. A mutation of the RNase Y-encoding gene (rny) led to a 2-fold increase in overall mRNA stability. RNase Y was also found to play a significant role in the mRNA processing of virulence-associated genes as well as in the rapid degradation of rnpB read-through transcripts. From these results, we conclude that RNase Y is a pleiotropic regulator required for mRNA stability, mRNA processing, and removal of read-through transcripts in S. pyogenes.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBlotting, NorthernDNA, ComplementaryEndoribonucleasesGene Expression ProfilingHalf-LifeMutationOligonucleotide Array Sequence AnalysisRNA, BacterialRNA, MessengerRNA StabilityStreptococcus pyogenesTranscriptomeBacterial ProteinsDNA, ComplementaryEndoribonucleasesRNA, BacterialRNA, Messenger

Identifiers

PMID23543715
PMCPMC3676074
OpenAlexW2128797308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.