Evidence map›Paper›PMID 23543709›Full record

ArticleJournal of bacteriology2013

Characterization of the ospZ promoter in Shigella flexneri and its regulation by VirB and H-NS.

David W Basta, Krystle L Pew, Joy A Immak, Hiromichi S Park, Michael A Picker, Amanda F Wigley, Christopher T Hensley, Jaclyn S Pearson, Elizabeth L Hartland, Helen J Wing

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. A Tale aboutMicroorganisms · 2023
    Review
  7. VirB, a key transcriptional regulator ofbioRxiv : the preprint server for biology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The T3SS ofMicroorganisms · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

David W BastaSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, Nevada, USA.
Krystle L Pew
Joy A Immak
Hiromichi S Park
Michael A Picker
Amanda F Wigley
Christopher T Hensley
Jaclyn S Pearson
Elizabeth L Hartland
Helen J Wing
University of Nevada, Las Vegas · USMurdoch Children's Research Institute · AUUniversity of Melbourne · AU

Funding

UNDERGRADUATE RESEARCH AND TRAININGP20RR016464 · NCRR · UNIVERSITY OF NEVADA RENO · PI REIBER, CARL · 2001 to 2011
$30.3M
Understanding transcriptional silencing & anti-silencing mechanisms in ShigellaR15AI090573 · NIAID · UNIVERSITY OF NEVADA LAS VEGAS · PI WING, HELEN J · 2010 to 2024
$2.3M
NCRR NIH HHS P20 RR-016464NCRR NIH HHS P20 RR016464NIAID NIH HHS R15 AI090573NIAID NIH HHS R15 AI090573-01
6 · The paper itself

Abstract

OspZ is an effector protein of the type III secretion system in Shigella spp. that downregulates the human inflammatory response during bacterial infection. The ospZ gene is located on the large virulence plasmid of Shigella. Many genes on this plasmid are transcriptionally repressed by the nucleoid structuring protein H-NS and derepressed by VirB, a DNA-binding protein that displays homology to the plasmid partitioning proteins ParB and SopB. In this study, we characterized the ospZ promoter and investigated its regulation by H-NS and VirB in Shigella flexneri. We show that H-NS represses and VirB partially derepresses the ospZ promoter. H-NS-mediated repression requires sequences located between -731 and -412 relative to the beginning of the ospZ gene. Notably, the VirB-dependent derepression of ospZ requires the same VirB binding sites as are required for the VirB-dependent derepression of the divergent icsP gene. These sites are centered 425 bp upstream of the ospZ gene but over 1 kb upstream of the icsP transcription start site. Although these VirB binding sites lie closer to ospZ than icsP, the VirB-dependent increase in ospZ promoter activity is lower than that observed at the icsP promoter. This indicates that the proximity of VirB binding sites to Shigella promoters does not necessarily correlate with the level of VirB-dependent derepression. These findings have implications for virulence gene regulation in Shigella and other pathogens that control gene expression using mechanisms of transcriptional repression and derepression.

Indexed as

Transcription Initiation SiteBacterial ProteinsBinding SitesDNA, BacterialDNA-Binding ProteinsDown-RegulationDysentery, BacillaryGene Expression Regulation, BacterialGenes, ReporterGenetic LociHumansPlasmidsPromoter Regions, GeneticSequence Analysis, DNAShigella flexneriTranscription, GeneticBacterial ProteinsDNA, BacterialDNA-Binding ProteinsH-NS protein, bacteriaVirulence Factors

Identifiers

PMID23543709
PMCPMC3676053
OpenAlexW2113498267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.