Evidence map›Paper›PMID 23543484›Full record

ArticleBrain : a journal of neurology2013

Limb-girdle muscular dystrophy 1F is caused by a microdeletion in the transportin 3 gene.

Maria J Melià, Akatsuki Kubota, Saida Ortolano, Juan J Vílchez, Josep Gámez, Kurenai Tanji, Eduardo Bonilla, Lluís Palenzuela, Israel Fernández-Cadenas, Anna Pristoupilová and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Maria J MeliàResearch Group on Neuromuscular and Mitochondrial Disorders, Vall d'Hebron Institut de Recerca, VHIR, Universitat Autònoma de Barcelona, Passeig Vall d'Hebron, 119-129 08035 Barcelona, Spain.
Akatsuki Kubota
Saida Ortolano
Juan J Vílchez
Josep Gámez
Kurenai Tanji
Eduardo Bonilla
Lluís Palenzuela
Israel Fernández-Cadenas
Anna Pristoupilová
Elena García-Arumí
Antoni L Andreu
Carmen Navarro
Michio Hirano
Ramon Martí
Columbia University Irving Medical Center · USInstituto de Salud Carlos III · ESUniversitat Autònoma de Barcelona · ESVall d'Hebron Institut de Recerca · ESBiomedical Research Networking Center on Neurodegenerative Diseases · ESCentro Nacional de Análisis Genómico · ESUniversity Hospital Complex Of Vigo · ES

Funding

The North American Mitochondrial Disease Consortium (NAMDC)U54NS078059 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2011 to 2023
$17.5M
Molecular Pathogenesis of Coenzyme Q10 DeficiencyR01HD057543 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2008 to 2012
$2.0M
Molecular Pathogenesis and Treatment of MNGIER01HD056103 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2010 to 2014
$1.9M
Pathogenesis of a Novel Limb-Girdle Muscular DystrophyR01AR047989 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2001 to 2003
$1.2M
NIAMS NIH HHS R01 AR047989NIAMS NIH HHS R01 AR47989NICHD NIH HHS R01 HD056103NICHD NIH HHS R01 HD057543NINDS NIH HHS U54 NS078059
6 · The paper itself

Abstract

In 2001, we reported linkage of an autosomal dominant form of limb-girdle muscular dystrophy, limb-girdle muscular dystrophy 1F, to chromosome 7q32.1-32.2, but the identity of the mutant gene was elusive. Here, using a whole genome sequencing strategy, we identified the causative mutation of limb-girdle muscular dystrophy 1F, a heterozygous single nucleotide deletion (c.2771del) in the termination codon of transportin 3 (TNPO3). This gene is situated within the chromosomal region linked to the disease and encodes a nuclear membrane protein belonging to the importin beta family. TNPO3 transports serine/arginine-rich proteins into the nucleus, and has been identified as a key factor in the HIV-import process into the nucleus. The mutation is predicted to generate a 15-amino acid extension of the C-terminus of the protein, segregates with the clinical phenotype, and is absent in genomic sequence databases and a set of >200 control alleles. In skeletal muscle of affected individuals, expression of the mutant messenger RNA and histological abnormalities of nuclei and TNPO3 indicate altered TNPO3 function. Our results demonstrate that the TNPO3 mutation is the cause of limb-girdle muscular dystrophy 1F, expand our knowledge of the molecular basis of muscular dystrophies and bolster the importance of defects of nuclear envelope proteins as causes of inherited myopathies.

Indexed as

Gene DeletionAdolescentAdultAgedBase Sequencebeta KaryopherinsChildChild, PreschoolFemaleHumansMaleMiddle AgedMolecular Sequence DataMuscular Dystrophies, Limb-GirdlePedigreebeta KaryopherinsTNPO3 protein, human

Identifiers

PMID23543484
PMCPMC3634201
OpenAlexW2103283930

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.