Evidence map›Paper›PMID 23543146›Full record

ArticleMolecular genetics and genomics : MGG2013

An active hAT transposable element causing bud mutation of carnation by insertion into the flavonoid 3'-hydroxylase gene.

Masaki Momose, Masayoshi Nakayama, Yoshio Itoh, Naoyuki Umemoto, Toshihiro Toguri, Yoshihiro Ozeki

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In one paragraph

Article in Molecular genetics and genomics : MGG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Sequence analysis of the genome of carnation (Dianthus caryophyllus L.).DNA research : an international journal for rapid publication of reports on genes and genomes · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Masaki MomoseCentral Laboratories for Key Technologies, Kirin Co., Ltd, Fukuura 1-13-5, Yokohama, Kanagawa, 236-0004, Japan. mmomose@kirin.co.jp
Masayoshi Nakayama
Yoshio Itoh
Naoyuki Umemoto
Toshihiro Toguri
Yoshihiro Ozeki
Kirin (Japan) · JPTokyo University of Agriculture and Technology · JPEY Technologies (United States) · USNational Agriculture and Food Research Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular mechanisms underlying spontaneous bud mutations, which provide an important breeding tool in carnation, are poorly understood. Here we describe a new active hAT type transposable element, designated Tdic101, the movement of which caused a bud mutation in carnation that led to a change of flower color from purple to deep pink. The color change was attributed to Tdic101 insertion into the second intron of F3'H, the gene for flavonoid 3'-hydroxylase responsible for purple pigment production. Regions on the deep pink flowers of the mutant can revert to purple, a visible phenotype of, as we show, excision of the transposable element. Sequence analysis revealed that Tdic101 has the characteristics of an autonomous element encoding a transposase. A related, but non-autonomous element dTdic102 was found to move in the genome of the bud mutant as well. Its mobilization might be the result of transposase activities provided by other elements such as Tdic101. In carnation, therefore, the movement of transposable elements plays an important role in the emergence of a bud mutation.

Indexed as

Mutagenesis, InsertionalAnthocyaninsBase SequenceCytochrome P-450 Enzyme SystemDianthusDNA, PlantDNA Transposable ElementsFlowersGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenome, PlantIntronsMolecular Sequence DataPigmentationPlant ProteinsReverse Transcriptase Polymerase Chain ReactionAnthocyaninsCytochrome P-450 Enzyme SystemDNA, PlantDNA Transposable Elementsflavonoid 3'-hydroxylasePlant Proteins

Identifiers

PMID23543146
OpenAlexW1979943641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.