Evidence map›Paper›PMID 23543116›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013

Development and characterization of cDNA resources for the common marmoset: one of the experimental primate models.

Shoji Tatsumoto, Naoki Adati, Yasushi Tohtoki, Yoshiyuki Sakaki, Thorsten Boroviak, Sonoko Habu, Hideyuki Okano, Hiroshi Suemizu, Erika Sasaki, Masanobu Satake

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 9 institutions in 2 countries.

Shoji TatsumotoRIKEN Genomic Sciences Center, Suehiro-cho 1-7-22, Tsurumi-ku, Yokohama 230-0045, Japan.
Naoki Adati
Yasushi Tohtoki
Yoshiyuki Sakaki
Thorsten Boroviak
Sonoko Habu
Hideyuki Okano
Hiroshi Suemizu
Erika Sasaki
Masanobu Satake
Central Institute for Experimental Animals · JPHamamatsu University School of Medicine · JPJuntendo University · JPKeio University · JPNational Cancer Research Institute · GBRIKEN Center for Integrative Medical Sciences · JPTohoku University · JPToyohashi University of Technology · JPUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The common marmoset is a new world monkey, which has become a valuable experimental animal for biomedical research. This study developed cDNA libraries for the common marmoset from five different tissues. A total of 290 426 high-quality EST sequences were obtained, where 251 587 sequences (86.5%) had homology (1E(-100)) with the Refseqs of six different primate species, including human and marmoset. In parallel, 270 673 sequences (93.2%) were aligned to the human genome. When 247 090 sequences were assembled into 17 232 contigs, most of the sequences (218 857 or 15 089 contigs) were located in exonic regions, indicating that these genes are expressed in human and marmoset. The other 5578 sequences (or 808 contigs) mapping to the human genome were not located in exonic regions, suggesting that they are not expressed in human. Furthermore, a different set of 118 potential coding sequences were not similar to any Refseqs in any species, and, thus, may represent unknown genes. The cDNA libraries developed in this study are available through RIKEN Bio Resource Center. A Web server for the marmoset cDNAs is available at http://marmoset.nig.ac.jp/index.html, where each marmoset EST sequence has been annotated by reference to the human genome. These new libraries will be a useful genetic resource to facilitate research in the common marmoset.

Indexed as

Gene LibraryAnimalsCallithrixContig MappingDNA, ComplementaryExonsExpressed Sequence TagsGenome, HumanHumansOpen Reading FramesSequence Analysis, DNASequence HomologyDNA, ComplementarycDNAcommon marmosetgene resource

Identifiers

PMID23543116
PMCPMC3686431
OpenAlexW2134746135

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.