Evidence map›Paper›PMID 23540550›Full record

ArticleJournal of proteome research2013

Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.

Bingyun Sun, Angelita G Utleg, Zhiyuan Hu, Shizhen Qin, Andrew Keller, Cynthia Lorang, Li Gray, Amy Brightman, Denis Lee, Vinita M Alexander and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Glycopeptide capture for cell surface proteomics.Journal of visualized experiments : JoVE · 2014
    Article
  7. Article
  8. Systems biology and p4 medicine: past, present, and future.Rambam Maimonides medical journal · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Bingyun SunInstitute for Systems Biology , 401 N. Terry Ave., Seattle, Washington 98109, USA. bingyun_sun@sfu.ca
Angelita G Utleg
Zhiyuan Hu
Shizhen Qin
Andrew Keller
Cynthia Lorang
Li Gray
Amy Brightman
Denis Lee
Vinita M Alexander
Jeffrey A Ranish
Robert L Moritz
Leroy Hood
Institute for Systems Biology · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Complete Human Peptide- and MRM-AtlasRC2HG005805 · NHGRI · INSTITUTE FOR SYSTEMS BIOLOGY · PI HOOD, LEROY E, MORITZ, ROBERT L · 2009 to 2010
$4.6M
NHGRI NIH HHS RC2 HG005805NIGMS NIH HHS P50 GM076547
6 · The paper itself

Abstract

Blood is an ideal window for viewing our health and disease status. Because blood circulates throughout the entire body and carries secreted, shed, and excreted signature proteins from every organ and tissue type, it is thus possible to use the blood proteome to achieve a comprehensive assessment of multiple-organ physiology and pathology. To date, the blood proteome has been frequently examined for diseases of individual organs; studies on compound insults impacting multiple organs are, however, elusive. We believe that a characterization of peripheral blood for organ-specific proteins affords a powerful strategy to allow early detection, staging, and monitoring of diseases and their treatments at a whole-body level. In this paper we test this hypothesis by examining a mouse model of acetaminophen (APAP)-induced hepatic and extra-hepatic toxicity. We used a glycocapture-assisted global quantitative proteomics (gagQP) approach to study serum proteins and validated our results using Western blot. We discovered in mouse sera both hepatic and extra-hepatic organ-specific proteins. From our validation, it was determined that selected organ-specific proteins had changed their blood concentration during the course of toxicity development and recovery. Interestingly, the peak responding time of proteins specific to different organs varied in a time-course study. The collected molecular information shed light on a complex, dynamic, yet interweaving, multiorgan-enrolled APAP toxicity. The developed technique as well as the identified protein markers is translational to human studies. We hope our work can broaden the utility of blood proteomics in diagnosis and research of the whole-body response to pathogenic cues.

Indexed as

AcetaminophenAlanine TransaminaseAnalgesics, Non-NarcoticAnimalsBlood ProteinsChemical and Drug Induced Liver InjuryGlycopeptidesGlycosylationHumansLiverMaleMiceMice, Inbred C57BLMolecular Sequence AnnotationOrgan SpecificityProtein Interaction MapsAcetaminophenAlanine TransaminaseAnalgesics, Non-NarcoticBlood ProteinsGlycopeptidesProteome

Identifiers

PMID23540550
PMCPMC4775253
OpenAlexW2322467990

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.