Evidence map›Paper›PMID 23539728›Full record

ArticleThe Journal of clinical endocrinology and metabolism2013

SRGAP1 is a candidate gene for papillary thyroid carcinoma susceptibility.

Huiling He, Agnieszka Bronisz, Sandya Liyanarachchi, Rebecca Nagy, Wei Li, Yungui Huang, Keiko Akagi, Motoyasu Saji, Dorota Kula, Anna Wojcicka and 19 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in The Journal of clinical endocrinology and metabolism, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 3 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 3 syntheses or guidelines pooled it, 86 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Relationships of FOXE1 and ATM genetic polymorphisms with papillary thyroid carcinoma risk: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genetic susceptibility to hereditary non-medullary thyroid cancer.Hereditary cancer in clinical practice · 2022
    Review
  12. Review
  13. Article
  14. The emerging roles of srGAPs in cancer.Molecular biology reports · 2022
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Familial non-medullary thyroid cancer: a critical review.Journal of endocrinological investigation · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 3 countries.

Huiling HeHuman Cancer Genetics Program and Department of Molecular Virology, Immunology, and Medical Genetics, Ohio State University Comprehensive Cancer Center, the Ohio State University, Columbus, Ohio 43210, USA.
Agnieszka Bronisz
Sandya Liyanarachchi
Rebecca Nagy
Wei Li
Yungui Huang
Keiko Akagi
Motoyasu Saji
Dorota Kula
Anna Wojcicka
Nikhil Sebastian
Bernard Wen
Zbigniew Puch
Michal Kalemba
Elzbieta Stachlewska
Malgorzata Czetwertynska
Joanna Dlugosinska
Kinga Dymecka
Rafal Ploski
Marek Krawczyk
Patrick J Morrison
Matthew D Ringel
Richard T Kloos
Krystian Jazdzewski
David E Symer
Veronica J Vieland
Michael Ostrowski
Barbara Jarząb
Albert de la Chapelle
Cancer Genetics (United States) · USThe Maria Sklodowska-Curie National Research Institute of Oncology · PLBattelle · USBelfast Health and Social Care Trust · GBMedical University of Warsaw · PLPostgraduate School of Molecular Medicine · PLRadiology Associates · USThe Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Selective Modulation of Thyroidal RadioiodineP01CA124570 · NCI · OHIO STATE UNIVERSITY · PI RINGEL, MATTHEW D · 2008 to 2017
$23.4M
NCI NIH HHS P01 CA124570NCI NIH HHS P01CA124570NCI NIH HHS P30 CA016058NCI NIH HHS P30CA16058
6 · The paper itself

Abstract

backgroundPapillary thyroid carcinoma (PTC) shows high heritability, yet efforts to find predisposing genes have been largely negative.

objectivesThe objective of this study was to identify susceptibility genes for PTC.

methodsA genome-wide linkage analysis was performed in 38 families. Targeted association study and screening were performed in 2 large cohorts of PTC patients and controls. Candidate DNA variants were tested in functional studies.

resultsLinkage analysis and association studies identified the Slit-Robo Rho GTPase activating protein 1 gene (SRGAP1) in the linkage peak as a candidate gene. Two missense variants, Q149H and A275T, localized in the Fes/CIP4 homology domain segregated with the disease in 1 family each. One missense variant, R617C, located in the RhoGAP domain occurred in 1 family. Biochemical assays demonstrated that the ability to inactivate CDC42, a key function of SRGAP1, was severely impaired by the Q149H and R617C variants.

conclusionsOur findings suggest that SRGAP1 is a candidate gene in PTC susceptibility. SRGAP1 is likely a low-penetrant gene, possibly of a modifier type.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseCarcinomaCarcinoma, Papillarycdc42 GTP-Binding ProteinCell Line, TumorCohort StudiesEnzyme ActivationFamily HealthFemaleGenome-Wide Association StudyGTPase-Activating ProteinsHEK293 CellsHumansLinkage DisequilibriumMalecdc42 GTP-Binding ProteinGTPase-Activating ProteinsProtein IsoformsRecombinant ProteinsSRGAP1 protein, human

Identifiers

PMID23539728
PMCPMC3644596
OpenAlexW2054877142

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.