Evidence map›Paper›PMID 23539628›Full record

ArticleThe Journal of biological chemistry2013

Elongation factor Ts directly facilitates the formation and disassembly of the Escherichia coli elongation factor Tu·GTP·aminoacyl-tRNA ternary complex.

Benjamin J Burnett, Roger B Altman, Ryan Ferrao, Jose L Alejo, Navdep Kaur, Joshua Kanji, Scott C Blanchard

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Tuning tRNAs for improved translation.Frontiers in genetics · 2024
    Review
  6. Article
  7. Elongation factor P modulatesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Transposon Insertion in thePathogens (Basel, Switzerland) · 2020
    Article
  12. Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Frontiers in cellular and infection microbiology · 2018
    Article
  17. Miscoding-induced stalling of substrate translocation on the bacterial ribosome.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Article
  19. Article
  20. Activation of contact-dependent antibacterial tRNase toxins by translation elongation factors.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Benjamin J BurnettDepartments of Physiology and Biophysics, Weill Cornell Medical College, New York, New York 10065, USA.
Roger B Altman
Ryan Ferrao
Jose L Alejo
Navdep Kaur
Joshua Kanji
Scott C Blanchard
Cornell University · US

Funding

Imaging Protein Synthesis on the Ribosome using Single-Molecule FRETR01GM079238 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2006 to 2023
$7.0M
Quantitative investigations of transporter dynamics and uptake at the single-moleR21MH099491 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2013 to 2014
$415k
NIGMS NIH HHS GM079238NIGMS NIH HHS R01 GM079238NIMH NIH HHS MH099491NIMH NIH HHS R21 MH099491
6 · The paper itself

Abstract

backgroundAminoacyl-tRNA (aa-tRNA) enters the ribosome in a ternary complex with the G-protein elongation factor Tu (EF-Tu) and GTP.

resultsEF-Tu·GTP·aa-tRNA ternary complex formation and decay rates are accelerated in the presence of the nucleotide exchange factor elongation factor Ts (EF-Ts).

conclusionEF-Ts directly facilitates the formation and disassociation of ternary complex. SIGNIFICANCE: This system demonstrates a novel function of EF-Ts. Aminoacyl-tRNA enters the translating ribosome in a ternary complex with elongation factor Tu (EF-Tu) and GTP. Here, we describe bulk steady state and pre-steady state fluorescence methods that enabled us to quantitatively explore the kinetic features of Escherichia coli ternary complex formation and decay. The data obtained suggest that both processes are controlled by a nucleotide-dependent, rate-determining conformational change in EF-Tu. Unexpectedly, we found that this conformational change is accelerated by elongation factor Ts (EF-Ts), the guanosine nucleotide exchange factor for EF-Tu. Notably, EF-Ts attenuates the affinity of EF-Tu for GTP and destabilizes ternary complex in the presence of non-hydrolyzable GTP analogs. These results suggest that EF-Ts serves an unanticipated role in the cell of actively regulating the abundance and stability of ternary complex in a manner that contributes to rapid and faithful protein synthesis.

Indexed as

Escherichia coliProtein MultimerizationBinding SitesEscherichia coli ProteinsGuanosine TriphosphateKineticsModels, MolecularPeptide Elongation FactorsPeptide Elongation Factor TuProtein BindingProtein StabilityProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryRNA, Transfer, Amino AcylSpectrometry, Fluorescenceelongation factor TsEscherichia coli ProteinsGuanosine TriphosphatePeptide Elongation FactorsPeptide Elongation Factor TuRNA, Transfer, Amino AcylElongation Factor TsElongation Factor TuG-proteinsGuanine Nucleotide Exchange Factor (GEF)Protein SynthesisTernary ComplexTransfer RNA (tRNA)Translation Regulation

Identifiers

PMID23539628
PMCPMC3650427
OpenAlexW1513882491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.