Evidence map›Paper›PMID 23539563›Full record

ArticleHuman molecular genetics2013

The role of nonsense-mediated decay in neuronal ceroid lipofuscinosis.

Jake N Miller, Chun-Hung Chan, David A Pearce

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. A recessiveJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. The CLN3 gene and protein: What we know.Molecular genetics & genomic medicine · 2019
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. NCLs and ER: A stressful relationship.Biochimica et biophysica acta. Molecular basis of disease · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jake N MillerSanford Children’s Health Research Center, Sanford Research/USD, Sioux Falls, SD 57104, USA
Chun-Hung Chan
David A Pearce
Sanford Research · US

Funding

The Impact of PD-1 Inhibition on Immune-Response to ChemoradiotherapyP20GM103548 · NIGMS · SANFORD RESEARCH/USD · PI MISKIMINS, W KEITH · 2012 to 2020
$20.8M
NIGMS NIH HHS P20 GM103548
6 · The paper itself

Abstract

Neuronal ceroid lipofuscinosis (NCL), commonly referred to as Batten disease, is a group of autosomal recessive neurodegenerative diseases of childhood characterized by seizures, blindness, motor and cognitive decline and premature death. Currently, there are over 400 known mutations in 14 different genes, leading to five overlapping clinical variants of NCL. A large portion of these mutations lead to premature stop codons (PTCs) and are predicted to predispose mRNA transcripts to nonsense-mediated decay (NMD). Nonsense-mediated decay is associated with a number of other genetic diseases and is an important regulator of disease pathogenesis. We contend that NMD targets PTCs in NCL gene transcripts for degradation. A number of PTC mutations in CLN1, CLN2 and CLN3 lead to a significant decrease in mRNA transcripts and a corresponding decrease in protein levels and function in patient-derived lymphoblast cell lines. Inhibiting NMD leads to an increased transcript level, and where protein function is known, increased activity. Treatment with read-through drugs also leads to increased protein function. Thus, NMD provides a promising therapeutic target that would allow read-through of transcripts to enhance protein function and possibly ameliorate Batten disease pathogenesis.

Indexed as

Nonsense Mediated mRNA DecayAminopeptidasesCell LineCodon, NonsenseDipeptidyl-Peptidases and Tripeptidyl-PeptidasesEnzyme ActivationGene OrderHumansMembrane GlycoproteinsMembrane ProteinsMolecular ChaperonesMutationNeuronal Ceroid-LipofuscinosesProteolysisRNA, MessengerSerine ProteasesAminopeptidasesCLN3 protein, humanCodon, NonsenseDipeptidyl-Peptidases and Tripeptidyl-PeptidasesMembrane GlycoproteinsMembrane ProteinsMolecular Chaperonespalmitoyl-protein thioesterasePPT1 protein, humanRNA, MessengerSerine ProteasesThiolester HydrolasesTPP1 protein, humanTripeptidyl-Peptidase 1

Identifiers

PMID23539563
PMCPMC4439521
OpenAlexW2121941288

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.