Evidence map›Paper›PMID 23539137›Full record

ArticleGenome research2013

Complex expression dynamics and robustness in C. elegans insulin networks.

Ashlyn D Ritter, Yuan Shen, Juan Fuxman Bass, Sankarganesh Jeyaraj, Bart Deplancke, Arnab Mukhopadhyay, Jian Xu, Monica Driscoll, Heidi A Tissenbaum, Albertha J M Walhout

Abstract read
In one paragraph

Article in Genome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Bioscience of microbiota, food and health · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ashlyn D RitterProgram in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Yuan Shen
Juan Fuxman Bass
Sankarganesh Jeyaraj
Bart Deplancke
Arnab Mukhopadhyay
Jian Xu
Monica Driscoll
Heidi A Tissenbaum
Albertha J M Walhout

Funding

Transcription networks in C elegans organogenesisR01DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI A. J. Marian Walhout · 2005 to 2026
$10.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Life span, Fat Storage and Insulin-like SignalingR01AG025891 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI TISSENBAUM, HEIDI A · 2005 to 2016
$3.3M
Gene Regulatory Networks in Development and PhysiologyR56DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WALHOUT, A. J. MARIAN · 2018 to 2018
$671k
Insulin networks in aging and obesityF31AG041605 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RITTER, ASHLYN DIXON · 2011 to 2014
$120k
NIA NIH HHS AG025891NIA NIH HHS AG041605NIA NIH HHS F31 AG041605NIA NIH HHS R01 AG025891NIDDK NIH HHS DK068429NIDDK NIH HHS R01 DK068429NIDDK NIH HHS R56 DK068429NIH HHS P40 OD010440
6 · The paper itself

Abstract

Gene families expand by gene duplication, and resulting paralogs diverge through mutation. Functional diversification can include neofunctionalization as well as subfunctionalization of ancestral functions. In addition, redundancy in which multiple genes fulfill overlapping functions is often maintained. Here, we use the family of 40 Caenorhabditis elegans insulins to gain insight into the balance between specificity and redundancy. The insulin/insulin-like growth factor (IIS) pathway comprises a single receptor, DAF-2. To date, no single insulin-like peptide recapitulates all DAF-2-associated phenotypes, likely due to redundancy between insulin-like genes. To provide a first-level annotation of potential patterns of redundancy, we comprehensively delineate the spatiotemporal and conditional expression of all 40 insulins in living animals. We observe extensive dynamics in expression that can explain the lack of simple patterns of pairwise redundancy. We propose a model in which gene families evolve to attain differential alliances in different tissues and in response to a range of environmental stresses.

Indexed as

Gene Expression RegulationSignal TransductionAnimalsCaenorhabditis elegansCluster AnalysisGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksInsulinRNA InterferenceInsulin

Identifiers

PMID23539137
PMCPMC3668363

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.