Evidence map›Paper›PMID 23538843›Full record

ArticleInternational journal of molecular sciences2013

Transcriptional analysis of drought-induced genes in the roots of a tolerant genotype of the common bean (Phaseolus vulgaris L.).

Gustavo Henrique Recchia, Danielle Gregorio Gomes Caldas, Ana Luiza Ahern Beraldo, Márcio José da Silva, Siu Mui Tsai

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Article in International journal of molecular sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

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18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  13. International journal of genomics · 2019
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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Gustavo Henrique RecchiaCenter of Nuclear Energy for Agriculture, Laboratory of Cellular and Molecular Biology, University of São Paulo, P.O. Box 96, Piracicaba 13400-970, SP, Brazil. dcaldas@cena.usp.br.
Danielle Gregorio Gomes Caldas
Ana Luiza Ahern Beraldo
Márcio José da Silva
Siu Mui Tsai

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Brazil, common bean (Phaseolus vulgaris L.) productivity is severely affected by drought stress due to low technology cultivation systems. Our purpose was to identify differentially expressed genes in roots of a genotype tolerant to water deficit (BAT 477) when submitted to an interruption of irrigation during its development. A SSH library was constructed taking as "driver" the genotype Carioca 80SH (susceptible to drought). After clustering and data mining, 1572 valid reads were obtained, resulting in 1120 ESTs (expressed sequence tags). We found sequences for transcription factors, carbohydrates metabolism, proline-rich proteins, aquaporins, chaperones and ubiquitins, all of them organized according to their biological processes. Our suppressive subtractive hybridization (SSH) library was validated through RT-qPCR experiment by assessing the expression patterns of 10 selected genes in both genotypes under stressed and control conditions. Finally, the expression patterns of 31 ESTs, putatively related to drought responses, were analyzed in a time-course experiment. Our results confirmed that such genes are more expressed in the tolerant genotype during stress; however, they are not exclusive, since different levels of these transcripts were also detected in the susceptible genotype. In addition, we observed a fluctuation in gene regulation over time for both the genotypes, which seem to adopt and adapt different strategies in order to develop tolerance against this stress.

Indexed as

DroughtsGene Expression ProfilingGene Expression Regulation, PlantAdaptation, PhysiologicalCluster AnalysisExpressed Sequence TagsGenes, PlantGenotypeHumidityPhaseolusPlant RootsReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSoftwareSoilRNA, MessengerSoilTranscription FactorsWater

Identifiers

PMID23538843
PMCPMC3645681

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.