Evidence map›Paper›PMID 23538681›Full record

ArticleEpigenetics2013

DNMT gene expression and methylome in Marek's disease resistant and susceptible chickens prior to and following infection by MDV.

Fei Tian, Fei Zhan, Nathan D VanderKraats, Jeffrey F Hiken, John R Edwards, Huanmin Zhang, Keji Zhao, Jiuzhou Song

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. DNA methylation in poultry: a review.Journal of animal science and biotechnology · 2023
    Review
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  18. Epigenetics and transgenerational inheritance in domesticated farm animals.Journal of animal science and biotechnology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Fei TianDepartment of Animal & Avian Sciences; University of Maryland; College Park, MD USA.
Fei ZhanDepartment of Animal & Avian Sciences; University of Maryland; College Park, MD USA.
Nathan D VanderKraatsCenter for Pharmacogenomics; Department of Medicine; Washington University School of Medicine; St. Louis, MO USA.
Jeffrey F HikenCenter for Pharmacogenomics; Department of Medicine; Washington University School of Medicine; St. Louis, MO USA.
John R EdwardsCenter for Pharmacogenomics; Department of Medicine; Washington University School of Medicine; St. Louis, MO USA.
Huanmin ZhangUSDA; ARS, Avian Disease and Oncology Laboratory; East Lansing, MI USA; Department of Animal Science; Michigan State University; East Lansing, MI USA.
Keji ZhaoLaboratory of Molecular Immunology; National Heart, Lung and Blood Institute; National Institutes of Health; Bethesda, MD USA.
Jiuzhou SongDepartment of Animal & Avian Sciences; University of Maryland; College Park, MD USA.
University of Maryland, College Park · USUniversity of Missouri–St. Louis · USCenter of Molecular Immunology (Cuba) · CUMichigan State University · US

Funding

Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
DNA Sequencing Core (DSC)ZICHL006058 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2010 to 2016
$16.6M
A MACHINE LEARNING APPROACH FOR FINE-SCALE GENOME WIDE DNA METHYLATION ANALYSISR21LM011199 · NLM · WASHINGTON UNIVERSITY · PI EDWARDS, JOHN R. · 2012 to 2013
$288k
NLM NIH HHS R21 LM011199
6 · The paper itself

Abstract

Marek's disease (MD) is characterized as a T cell lymphoma induced by a cell-associated α-herpesvirus, Marek's disease virus type 1 (MDV1). As with many viral infectious diseases, DNA methylation variations were observed in the progression of MD; these variations are thought to play an important role in host-virus interactions. We observed that DNA methyltransferase 3a (DNMT3a) and 3b (DNMT3b) were differentially expressed in chicken MD-resistant line 6 3 and MD-susceptible line 7 2 at 21 d after MDV infection. To better understand the role of methylation variation induced by MDV infection in both chicken lines, we mapped the genome-wide DNA methylation profiles in each line using Methyl-MAPS (methylation mapping analysis by paired-end sequencing). Collectively, the data sets collected in this study provide a more comprehensive picture of the chicken methylome. Overall, methylation levels were reduced in chickens from the resistant line 6 3 after MDV infection. We identified 11,512 infection-induced differential methylation regions (iDMRs). The number of iDMRs was larger in line 7 2 than in line 6 3, and most of iDMRs found in line 6 3 were overlapped with the iDMRs found in line 7 2. We further showed that in vitro methylation levels were associated with MDV replication, and found that MDV propagation in the infected cells was restricted by pharmacological inhibition of DNA methylation. Our results suggest that DNA methylation in the host may be associated with disease resistance or susceptibility. The methylation variations induced by viral infection may consequentially change the host transcriptome and result in diverse disease outcomes.

Indexed as

DNA MethylationHerpesvirus 2, GallidAnimalsAzacitidineCell LineChick EmbryoChickensDisease ResistanceDisease SusceptibilityDNA (Cytosine-5-)-MethyltransferasesMarek DiseaseAzacitidineDNA (Cytosine-5-)-MethyltransferaseschickenDNA methylationepigeneticsMarek’s diseasetumorviral infection

Identifiers

PMID23538681
PMCPMC3674052
OpenAlexW1996652915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.